PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0609s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 359aa    MW: 40316.6 Da    PI: 7.9636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0609s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-15110155147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v q+G+++W++Ia+++  gR++k+c++rw++ 
  Kalax.0609s0004.1.p 110 RGHWRPAEDVKLKELVDQFGPHNWNLIAERLL-GRSGKSCRLRWFNQ 155
                          899****************************9.***********996 PP
2Myb_DNA-binding48.71.8e-15163205246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           ++++eE+e+l++ +k++G++ W+ I++ ++ gRt++ +k++w+ 
  Kalax.0609s0004.1.p 163 RPFSAEEEEKLLQSHKLFGNK-WAMISKLFP-GRTDNAVKNHWHV 205
                          68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.006105156IPR017930Myb domain
SMARTSM007172.6E-13109158IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-28110203IPR009057Homeodomain-like
PfamPF002494.2E-15110155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-25111163IPR009057Homeodomain-like
CDDcd001677.12E-12113154No hitNo description
PROSITE profilePS5129425.064157211IPR017930Myb domain
SMARTSM007173.1E-14161209IPR001005SANT/Myb domain
PfamPF002497.7E-13162204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-21164210IPR009057Homeodomain-like
CDDcd001678.95E-11164204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKLQNLKSNA ANGYTSFFPC PPPLFPSKNL DKEETGGNMR KPSDLNHASV WDEGENTYYF  60
KSNRFDLNER LYGEGRSTDE AAEIKHIYQD CDAEAPNDGR SENIQKLCAR GHWRPAEDVK  120
LKELVDQFGP HNWNLIAERL LGRSGKSCRL RWFNQLDPKI NKRPFSAEEE EKLLQSHKLF  180
GNKWAMISKL FPGRTDNAVK NHWHVIMARK QREQNICVYK KLKPNPISAA SLKEFVACSD  240
DSTVTTVSNT GVELMLTPTS ARETPCLFAK SPQPPSPMGS NEGPTHNVID LNKQQLSEFA  300
GKSEFDSEGS ALNSTICMKV HKDKLKVFGD DKDRVNEPGA ICSNRFIPLI DFLGLGLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-311102104104C-Myb DNA-Binding Domain
1msf_C4e-311102104104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622094.15e-73transcription factor MYB56-like
TrEMBLA0A2C9VAJ61e-71A0A2C9VAJ6_MANES; Uncharacterized protein
STRINGcassava4.1_024606m2e-72(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-63myb domain protein 105