PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0605s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23367.2 Da PI: 10.4552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.3e-20 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAa+a++ a+ +++g Kalax.0605s0013.1.p 18 HFRGVRKRP-WGRYAAEIRDPKK---KSRVWLGTFDTAEEAARAYDTAAIEFRG 67 69*******.**********854...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.96E-22 | 18 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-13 | 18 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.342 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-38 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 18 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-32 | 18 | 75 | No hit | No description |
PRINTS | PR00367 | 4.3E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAPTTAQKKA AGGEKGVHFR GVRKRPWGRY AAEIRDPKKK SRVWLGTFDT AEEAARAYDT 60 AAIEFRGAKA KTNFPFPALG RPPALPQHNL SPSQSSTVES SSRESHTPAA SAAPSAVFGS 120 PMRFPFHNFQ LAAGSPIAGV LQPNMFFFDP VTRPARSVTF QPYPNLKSAV AVSSAAVNFH 180 GPAYSDSDSS SVLDTSNPTS RPPVLDIDLN FPPPDNTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-23 | 15 | 76 | 2 | 64 | ATERF1 |
3gcc_A | 7e-23 | 15 | 76 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026396826.1 | 3e-48 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A3Q7ICU7 | 1e-45 | A0A3Q7ICU7_SOLLC; Uncharacterized protein | ||||
TrEMBL | Q84LQ6 | 8e-46 | Q84LQ6_SOLLC; Ethylene response factor 2 | ||||
STRING | Solyc10g009110.1.1 | 2e-46 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-24 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0605s0013.1.p |