PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0601s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 438aa    MW: 48513.7 Da    PI: 5.0807
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0601s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.91.7e-120664372374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavs+gdl+ a al+  l++++s +gdp+qRl ay++e+L+ar+  s+s++yk+l+++e +  +sse +++++++++++P+ 
  Kalax.0601s0029.1.p  66 NQLLLRCAEAVSDGDLSTAGALMDALEQIVSISGDPVQRLGAYMLEGLRARMETSGSGIYKSLRCTEPA--SSSEMMSYMQVLYQMCPYW 153
                          689***************************************************************998..59999************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          kf++++aN aI eave ++r+H++Df+i qG QW+ L++aL+ R++gpp  lR+Tgv+++es+  +   l+ +ge L+++A++++vpfef
  Kalax.0601s0029.1.p 154 KFAYVAANAAIQEAVEDDDRIHVVDFQIAQGSQWADLIKALSIRQRGPPhILRVTGVDDAESThaRGGGLRIVGETLSELAASCDVPFEF 243
                          *********************************************8888479*******9988889999********************* PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +   ++++  l  e+L + pgEa++ n+ + lh+++desv+++++rde+L++v++lsP+v+++veqe+++n++ F++rf e+l+yy+a+f
  Kalax.0601s0029.1.p 244 HQASMSDVRLL-RENLVLVPGEAMVFNFPYVLHHVPDESVNTDNYRDELLRMVQGLSPRVLTLVEQESNTNTSAFVHRFRETLDYYTAMF 332
                          **766677777.89**************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s+++  +r+++ r + E ++++++i +++ cegaer+erhe l+kWr+r++ aGF + +ls  +a+ +k +l+ ++ + y++ee++g+l
  Kalax.0601s0029.1.p 333 ESIDVARARDDSLRLNAEMHCVAKDIISMIGCEGAERVERHELLAKWRARFSLAGFAQRRLSPAVADCVKDMLKDFHTN-YTLEEHKGAL 421
                          *****************************************************************************77.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgWk+r++v++SaWr
  Kalax.0601s0029.1.p 422 YLGWKNRAMVTCSAWR 437
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.85239418IPR005202Transcription factor GRAS
PfamPF035146.0E-11866437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSSGSNEQFF TLESSFSPAN HLFTPYESPQ TAASVLSDTS PYSSQGSHYG GASSSSVPTR  60
TSLDINQLLL RCAEAVSDGD LSTAGALMDA LEQIVSISGD PVQRLGAYML EGLRARMETS  120
GSGIYKSLRC TEPASSSEMM SYMQVLYQMC PYWKFAYVAA NAAIQEAVED DDRIHVVDFQ  180
IAQGSQWADL IKALSIRQRG PPHILRVTGV DDAESTHARG GGLRIVGETL SELAASCDVP  240
FEFHQASMSD VRLLRENLVL VPGEAMVFNF PYVLHHVPDE SVNTDNYRDE LLRMVQGLSP  300
RVLTLVEQES NTNTSAFVHR FRETLDYYTA MFESIDVARA RDDSLRLNAE MHCVAKDIIS  360
MIGCEGAERV ERHELLAKWR ARFSLAGFAQ RRLSPAVADC VKDMLKDFHT NYTLEEHKGA  420
LYLGWKNRAM VTCSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-53624371375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449893.10.0scarecrow-like protein 13
RefseqXP_024047696.10.0scarecrow-like protein 13
SwissprotQ9M0M51e-171SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2H5N5780.0A0A2H5N578_CITUN; Uncharacterized protein
TrEMBLV4WA260.0V4WA26_9ROSI; Uncharacterized protein
STRINGXP_006449893.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-172SCARECROW-like 13