PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0587s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23472.3 Da PI: 6.5114 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 34 | 83 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+Wv+eIr p++ + r++lg+f ae+Aa+a++ a +++g+ Kalax.0587s0006.1.p 34 YRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFPNAEMAARAHDVASFAFKGH 83 9****998.**********843...6********************99888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.0E-11 | 32 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-21 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.51 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-34 | 33 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-31 | 33 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-30 | 34 | 92 | No hit | No description |
PRINTS | PR00367 | 4.3E-10 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAECDGQQPS SSNDLRPKVE KKKGGRSHEE RPAYRGVRMR SWGKWVSEIR QPRKKSRIWL 60 GTFPNAEMAA RAHDVASFAF KGHSAHLNFP HLITCLPRPA SLLPSHIRAA ASKAAAMIHP 120 GSDPADALSD DADKESEQGS YWNEMGASSE LVELPSLLAQ SEASGQDVQS RESVVAMEWR 180 PDQCWFWGDM PDIDWFVHVD QNRLPDINVV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 23 | 91 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426907.1 | 4e-44 | ethylene-responsive transcription factor ERF036 | ||||
TrEMBL | V4SHT9 | 9e-43 | V4SHT9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426907.1 | 1e-43 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 8e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0587s0006.1.p |