PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0583s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 255aa    MW: 29152.8 Da    PI: 7.9161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0583s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-17855148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd+ll+++++++G g W+ +  + g++R++k+c++rw++yl
  Kalax.0583s0003.1.p  8 RGAWTPEEDKLLKECIEKYGVGKWNEVVTRSGLNRCRKSCRLRWLDYL 55
                         89*******************************************997 PP
2Myb_DNA-binding40.94.7e-1361106148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg + ++E +l+ +++k+lG++ W++Ia +++ gRt++ +k++w++++
  Kalax.0583s0003.1.p  61 RGGFGEDEVDLICKLHKLLGNR-WSLIAGRLP-GRTANGVKNYWNSHM 106
                          677899****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.15159IPR017930Myb domain
SuperFamilySSF466893.15E-275102IPR009057Homeodomain-like
SMARTSM007172.2E-14757IPR001005SANT/Myb domain
PfamPF002495.6E-16855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-21962IPR009057Homeodomain-like
CDDcd001679.68E-111055No hitNo description
SMARTSM007174.9E-1160108IPR001005SANT/Myb domain
PROSITE profilePS5129417.31860110IPR017930Myb domain
PfamPF002492.2E-1161105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2063109IPR009057Homeodomain-like
CDDcd001678.11E-766106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSGLGVRRGA WTPEEDKLLK ECIEKYGVGK WNEVVTRSGL NRCRKSCRLR WLDYLQPNIK  60
RGGFGEDEVD LICKLHKLLG NRWSLIAGRL PGRTANGVKN YWNSHMRKKQ HQKVMCHKAS  120
SHHQTTTPNK EGCVIVKPQP WRFSKTSLAS LQKKLSVQFQ HNFHCDRVKN DTKQTCSPYS  180
FELQEDALSI SSWWEDLLQK DDNFFVDQNA DDGSVGICWS DVDAGTTTAE CNEADGVVNL  240
DDQELYFNIQ LWDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-24810927127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FNV98e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3S6QBC94e-62A0A3S6QBC9_PETIN; Anthocyanin synthesis regulator 3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]