PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0580s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 314aa    MW: 34197.2 Da    PI: 7.4332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0580s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-20147196255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ kl+g
  Kalax.0580s0024.1.p 147 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDQAAHKLRG 196
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-31146205No hitNo description
Gene3DG3DSA:3.30.730.103.7E-32147205IPR001471AP2/ERF domain
PROSITE profilePS5103222.866147204IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22147205IPR016177DNA-binding domain
SMARTSM003803.4E-34147212IPR001471AP2/ERF domain
PRINTSPR003675.1E-11148159IPR001471AP2/ERF domain
PfamPF008475.5E-14148196IPR001471AP2/ERF domain
PRINTSPR003675.1E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAAATDFYSG GGSVFPDLFQ GEAFDTFINS PSPCSSSSSF NSSFGYQLPS VSSSHTGFYT  60
PFQLCSAEQS FYGGFTQPES IGLNSLTSAQ IRQIQSQLHL QQISTAPAAS PAKQARTFTP  120
SCGDRSFALL CPKPAPMKLA VPRQIKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA  180
EDAALAYDQA AHKLRGGAAR LNFPDFHCRP RSALHASVDA KVDAICNTLD QKPTPKNRKS  240
AAANKDVKTE TPASPSVSSS SPALNQVWDE LQTTSSPESG ISYLDFAEVE WDECDNKLSL  300
EKFPSVEIDW AAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20146204160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177314.15e-66PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotO656658e-58ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A2N9F9N02e-61A0A2N9F9N0_FAGSY; Uncharacterized protein
TrEMBLA9PL894e-62A9PL89_POPTR; RAP2.4-like protein
STRINGXP_010526650.11e-62(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-44ERF family protein