PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0569s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 321aa MW: 34715.3 Da PI: 6.9863

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0569s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.1e-39	31	90	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+ k+s Kalax.0569s0013.1.p 31 NQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSPKRS 90 7899***************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	30	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	32	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MQDIHLIGAG RVFTGAGGGG DRRLRPNYLQ NQALKCPRCD SLNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSPKRS SSAKSAKPTK DSKPPSHKPS NNSNSSSESS 120 SLTVTTATAT TTVPAADLGA VPSTSAATPA SADAVPSSLT AMYGFADAKY VFPQIRIPNF 180 TSELMGGADG EGFTEIGNFT GLMTSSPNND PITVSMATSY DVVSPFPMNL SDENPQQQQI 240 EPWQQLSSEE GKLQDIADAE TGYVDPTMQF DQTCDGGSEP LNWQQQMFGL TSAVDNGYWS 300 QAHWSRSNSD NHHHHHLYLP *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662917	1e-63	KP662917.1 Cajanus cajan Dof25 (Dof25) gene, partial cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-32	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Kalax.0569s0013.1.p