PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0568s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 471aa MW: 50376.2 Da PI: 7.4363

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0568s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.1	1.7e-37	128	187	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvP G+grrk+k+s Kalax.0568s0011.1.p 128 PDKILPCPRCNSLETKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPAGSGRRKSKSS 187 68999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-26	125	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-31	130	186	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.36	132	186	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	134	170	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MALLRDPTIK LFGKTIPLPF PNIAAPAPTE LSADCSEAGE SGGAAQVEVA DDQSSREVEE 60 VGAFDAKKYV VEVEADDHQG ESSNKGLVDG SASSGIIDLE GLADEGLKNR DHGDETTRVA 120 DGRTLKRPDK ILPCPRCNSL ETKFCYYNNY NVNQPRHFCK NCQRYWTAGG SMRNVPAGSG 180 RRKSKSSGGA ICRQVLVSEA ALHSGQCGES NGVLKFGSDA PLCDSMANVL NLAENGENCC 240 QMGGECHRNA DKGLSKVNSS CSNLVEKGNE GRSVAKNFQG YPIQVPCYPG PPWPIPWNPA 300 MPPPHVGLAG YPVQFYSMQN CWSSGMMGAW IHQQPISSPS STGSPLISPS SSPNSPRLGK 360 HSRDGEMINV TNKSDGGLEP KASRGIWIPK TLRIDDPSQA VKSSIWETLG IQNEKSSING 420 SGIFKSFPQK DGSCGNSKVP KRPHHLHTNP AALSRSQNFH ETTSVNHAST *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MALLRDPTIK LFGKTIPLPF PNIAAPAPTE LSADCSEAGE SGGAAQVEVA DDQSSREVEE  60
VGAFDAKKYV VEVEADDHQG ESSNKGLVDG SASSGIIDLE GLADEGLKNR DHGDETTRVA  120
DGRTLKRPDK ILPCPRCNSL ETKFCYYNNY NVNQPRHFCK NCQRYWTAGG SMRNVPAGSG  180
RRKSKSSGGA ICRQVLVSEA ALHSGQCGES NGVLKFGSDA PLCDSMANVL NLAENGENCC  240
QMGGECHRNA DKGLSKVNSS CSNLVEKGNE GRSVAKNFQG YPIQVPCYPG PPWPIPWNPA  300
MPPPHVGLAG YPVQFYSMQN CWSSGMMGAW IHQQPISSPS STGSPLISPS SSPNSPRLGK  360
HSRDGEMINV TNKSDGGLEP KASRGIWIPK TLRIDDPSQA VKSSIWETLG IQNEKSSING  420
SGIFKSFPQK DGSCGNSKVP KRPHHLHTNP AALSRSQNFH ETTSVNHAST *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-62	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Kalax.0568s0011.1.p