PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0568s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17150.1 Da PI: 4.5257 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.7 | 1.9e-15 | 5 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r + + +Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++l+g Kalax.0568s0010.1.p 5 PRYRGIRARGT--KWVSEIREPRK---TNRIWLGTYPTPEMAAAAYDTAALALRG 54 68****97765..9*******854...49************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-9 | 5 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.70E-15 | 5 | 63 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-26 | 6 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.612 | 6 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-26 | 6 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 6 | 62 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.3E-7 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-7 | 44 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MHTHPRYRGI RARGTKWVSE IREPRKTNRI WLGTYPTPEM AAAAYDTAAL ALRGSDAVLN 60 FPEFGNMYPA PASLSAADIR AAAEAAAAQR LPQPVDEAVQ GGGGGQTGVD QEYVDEDAIF 120 DMPNYLAEMA EGMMVSPPRI KPPGGDDPGE GSSSGGLWGY P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 4 | 67 | 12 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278525.1 | 1e-56 | PREDICTED: ethylene-responsive transcription factor ERF026-like | ||||
Swissprot | Q9FJ90 | 7e-45 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1U8BN80 | 3e-55 | A0A1U8BN80_NELNU; ethylene-responsive transcription factor ERF026-like | ||||
STRING | XP_010278525.1 | 6e-56 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 5e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0568s0010.1.p |
Publications ? help Back to Top | |||
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