PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0567s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 204aa MW: 23021.9 Da PI: 7.3715 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 45.7 | 1.5e-14 | 21 | 64 | 8 | 54 |
ZF-HD_dimer 8 eClkNhAa.slGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHR 54 ClkNhA + g+++DGC+ f+p g++++ C ACgCHR FH Kalax.0567s0018.1.p 21 ACLKNHARpKERGQSFDGCQQFTPR----GDVNSYVCDACGCHRAFHQ 64 6******736789***********9....899***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 15.82 | 19 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.2E-11 | 21 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-5 | 22 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-5 | 101 | 157 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MENNNDGSYL PIVPYVDVSG ACLKNHARPK ERGQSFDGCQ QFTPRGDVNS YVCDACGCHR 60 AFHQVILRET REEPQLLPLL DNLERGLNRP IRHSRIPPQP NVVRRKARTK VSPYEEIIME 120 YVTDIIGWNP RQQDKNEANK LCEDLNISRA YYLGWIRDMK MLRDTERQAA RVEAERAARA 180 AREADEAAAA AGSLLLLGNS SSD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 3e-14 | homeobox protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0567s0018.1.p |