PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0565s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 290aa    MW: 31609.3 Da    PI: 7.7657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0565s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-162370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEdell +++++ G g W+t +++ g+ R++k+c++rw +yl
  Kalax.0565s0008.1.p 23 RGPWTAEEDELLTKCINKEGEGKWRTLPERAGLARCGKSCRLRWMNYL 70
                         89********************************************97 PP
2Myb_DNA-binding46.67.8e-1581121648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0565s0008.1.p  81 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNSHL 121
                          89***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1071870IPR017930Myb domain
SuperFamilySSF466894.12E-2919117IPR009057Homeodomain-like
SMARTSM007172.5E-122272IPR001005SANT/Myb domain
PfamPF002491.7E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-212477IPR009057Homeodomain-like
CDDcd001676.45E-112570No hitNo description
PROSITE profilePS5129422.82971125IPR017930Myb domain
SMARTSM007176.0E-1375123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2378126IPR009057Homeodomain-like
PfamPF002491.3E-1381121IPR001005SANT/Myb domain
CDDcd001671.82E-1181121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRNPSSSVTE KKSSSGRKMG LKRGPWTAEE DELLTKCINK EGEGKWRTLP ERAGLARCGK  60
SCRLRWMNYL RPCVKRGQIA PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNSH  120
LSKKLISQGI DPKTHKPLVE TSSTRAITKS LGAAKNGRRS ESDNSGSSKM VTTTPPTSSG  180
QNPNMYQHHF GSAVDGLEDD QMMTRGGHGN AAASDAQESA GCYYSAGQCC ETNLHLEDGG  240
ADAGGYHVNL QQSSQGLGNE DGIDCKGMLE DDGVFSSFLN SLINDDMFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25211255108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594698.12e-88transcription repressor MYB5-like
TrEMBLA0A2C9UER54e-87A0A2C9UER5_MANES; Uncharacterized protein
STRINGcassava4.1_011594m7e-88(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-73myb domain protein 5