PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0563s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 707aa    MW: 77301.5 Da    PI: 8.1423
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0563s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-24107208199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Kalax.0563s0022.1.p 107 FAKTLTQSDANNGGGFSVPRYCAETMfprldytADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 194
                          89*********************999****997556555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            +++++el+v+++r+
  Kalax.0563s0022.1.p 195 --RTESGELCVGIRRA 208
                          ..5599********97 PP
2Auxin_resp1163.2e-38278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa++a+++++FevvY+Pra+t+eF+v ++ v++a+++++++GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Kalax.0563s0022.1.p 278 AATSAAKGQPFEVVYYPRACTPEFCVAASAVKAAMRIQWCPGMRFKMPFETEDSSRISWfMGTVSSVQVADPIRWPNSPWRLLQ 361
                          68999*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-37101211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-28101210IPR015300DNA-binding pseudobarrel domain
CDDcd100175.08E-21106207No hitNo description
SMARTSM010197.1E-21107209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126107209IPR003340B3 DNA binding domain
PfamPF023625.4E-22107208IPR003340B3 DNA binding domain
PfamPF065077.1E-33278361IPR010525Auxin response factor
PROSITE profilePS5174518.698593673IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MERSLDSQLW HACAGGMVQM PKVNSRVFYF PQGHAEHAQA SLDFGVSPKV GPLVPCRVAS  60
VQFLADPETD EVYAKIRLVP VGNREMEFDV DDLGSRGPES VDKPASFAKT LTQSDANNGG  120
GFSVPRYCAE TMFPRLDYTA DPPVQTVVAK DVHGEIWKFR HIYRGTPRRH LLTTGWSTFV  180
NQKKLVAGDS IVFLRTESGE LCVGIRRAKR GIESGSGGVG SQSGWNASPG HFISPYGGGG  240
GGYSVFLRDD ENGFLRNGCS EGGLKTNKKV KAESVIEAAT SAAKGQPFEV VYYPRACTPE  300
FCVAASAVKA AMRIQWCPGM RFKMPFETED SSRISWFMGT VSSVQVADPI RWPNSPWRLL  360
QVTWDEPDLL QNVNRVSPWL VELVSNMPVM NMSPFSPPRK KLRFPPHPDF PLDGPLSLSS  420
FSGNNLGPGS SLRCLTDSTP PSIQGARHAQ FGISLSDIHF NNKLHSSSGM FPPRVNQFPR  480
FFSNIISSNE SGSCLLSIGN SNHTIEKPKD SKKQPFVLFG QPILTEQEIT LRHSSESTAK  540
ALTRNNSSDD YQMNHEKLHL TSLELRRSLS DTSSHAGFSR LFGFPSDEHN MGSGLCKVFM  600
GDDNVGRTLD LSAIQSYQEL CLKLAELFGI EKPGALSHIL YHDAMGALKR IGDEPFSDFR  660
RSAKNLTITV DPGNSNGREQ RVLGLGKAES GLCSSKTATG PLSILA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-73538251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882698.10.0auxin response factor 18
RefseqXP_023882705.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2N9HWN20.0A0A2N9HWN2_FAGSY; Auxin response factor
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]