PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0562s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 39241.5 Da PI: 6.7028 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lvd +++ G g+W++ ++ g++R++k+c++rw +yl Kalax.0562s0008.1.p 15 KGPWTPEEDEKLVDFINKNGHGSWRSLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+ ++++++ lG++ W++Ia +++ gRt++++k++w+++l Kalax.0562s0008.1.p 68 RGKFSEDEERIIIHLHSVLGNK-WSRIATHLP-GRTDNEIKNFWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.046 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.252 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.41E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGRSPISFED DGLKKGPWTP EEDEKLVDFI NKNGHGSWRS LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEDEERIII HLHSVLGNKW SRIATHLPGR TDNEIKNFWN THLRRKLLQM 120 GIDPTTHKPR TDYNNLLMNL TQLLATSNIA NLMSNNNNPW ENLSALRLQA DAAAQLAKAQ 180 LFQNLIQAIN ITNTQNTLGF GTSQDHTSLQ GLLHSNSGSH DTNNNNVLSS KHQFLNPSET 240 PLTHQVCDEL QGVANSWAAN YQGGGLNPES GLSTNDNSPY YQVDLPALVT VSQDCSTSAN 300 QIETTKDHNL SSSYTFSSFS PTGSSFQSWA ELFDEEAIHN YSFIKDFLQQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974072.1 | 1e-109 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9S9Z2 | 5e-82 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A061G6W5 | 1e-108 | A0A061G6W5_THECC; Myb domain protein 39, putative | ||||
STRING | EOY25138 | 1e-109 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-79 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0562s0008.1.p |
Publications ? help Back to Top | |||
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