PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0556s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 324aa    MW: 36255.9 Da    PI: 6.5091
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0556s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18100153356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Kalax.0556s0005.1.p 100 KKRRLNVEQVKTLEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWK 153
                          566899***********************************************9 PP
2HD-ZIP_I/II130.56.7e-4299189191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kkrrl+ eqvk+LE+sFe  +kLeperKv+lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr++da+k++ne+L++++++L+++
  Kalax.0556s0005.1.p  99 QKKRRLNVEQVKTLEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFDAVKAHNEALQTQNQKLQSQ 188
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 l 91 
                          +
  Kalax.0556s0005.1.p 189 I 189
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.95795155IPR001356Homeobox domain
SuperFamilySSF466895.13E-1997157IPR009057Homeodomain-like
SMARTSM003897.3E-1898159IPR001356Homeobox domain
CDDcd000862.74E-1699156No hitNo description
PfamPF000462.5E-15100153IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-18102163IPR009057Homeodomain-like
PRINTSPR000311.4E-5126135IPR000047Helix-turn-helix motif
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5135151IPR000047Helix-turn-helix motif
PfamPF021835.9E-15155193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGCNGMAFFP ANFMLQTSQD QEDEDDNHHQ HNQHQRHQQP PIFPSPQDFN GVAAFLGGKR  60
SMPLMEQHQS NNGCEDNTKN NTNGDQDELS DDGSLAGDQK KRRLNVEQVK TLEKSFELGN  120
KLEPERKVQL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDALKRQFDA VKAHNEALQT  180
QNQKLQSQIL ALTSGREGGG GAAGVATESF NLNKETIDQG SCSNRSENSS DHQINMVKLG  240
PASETSPSQI PTSMPLFPTS TSTTTTNSMR PASSSNLSAT QLLFHHHNPQ HGVKEENFSN  300
MMFCGIEDHS GFWPWLDQHQ NFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614380.11e-107homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021614381.11e-107homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021614382.11e-107homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021614383.11e-107homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC033e-94ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A251KUY61e-105A0A251KUY6_MANES; Uncharacterized protein
STRINGPOPTR_0008s14770.11e-106(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-91HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]