PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0555s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 33471.6 Da PI: 8.3142 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 150 | 199 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa+a+++a+ kl+g Kalax.0555s0016.1.p 150 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAARAYDKAAYKLRG 199 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.25E-34 | 149 | 208 | No hit | No description |
SMART | SM00380 | 1.2E-38 | 150 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-23 | 150 | 208 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-33 | 150 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.854 | 150 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 151 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-14 | 151 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 173 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAAATECFSS NYSLLSDPVG EELMNALRPF IKSSNCSSPS SSSLSSSPYS SSSSSSYAPF 60 HSDPSWKAAQ VKSEQILSKA VGSIGLNSLS PTQILQIQLQ LNLGFSNPQQ PHQQPLLSDN 120 SQNEAASRLR MLSPKTVHMK LLSAAKATKL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF 180 DTAEDAARAY DKAAYKLRGD SARLNFPHMR SALAIDLDQV RTFPSSVDAK LHAICQNLGK 240 KEPYVTTETE AGSFLFDRSQ ESCEISFLNF RESKWEEGDE NWAKFQLDKL PSVEIDWESI 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 149 | 207 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019177314.1 | 8e-71 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
TrEMBL | A0A3S8T914 | 2e-64 | A0A3S8T914_FRAAN; Transcription factor ERF4 | ||||
STRING | XP_004288218.1 | 8e-65 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 4e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0555s0016.1.p |