PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0554s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 470aa    MW: 50902.7 Da    PI: 7.7091
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0554s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.7e-36742252132
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                +++s+s + a
  Kalax.0554s0013.1.p  74 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAADSIAELPSLtgpfpetprqlcdaklGFESSSVAAA 163
                          689*************************************************************99999888888888884444433322 PP

                  TCP  76 esssssasnsssgkaaksaakskksqksaasalnlak.....esrakarararertrekmri 132
                          +++  +++++++ + + s   s+ s++s+ s l+l +     ++r +ar+rarer +ek + 
  Kalax.0554s0013.1.p 164 AAEADASHTQQKMNVSMSISASSTSETSKGSGLSLTRtdarvNQRVRARERARERAKEKESE 225
                          22222222222222222222344444444444555554111345566666666666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.6E-4075224IPR005333Transcription factor, TCP
PROSITE profilePS5136930.96676134IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDVEEFQSQI YTSKYPRVST TNNGGGGGDE DDADDTPTRN HHSTVVAAEP QMLADSMFRG  60
WQHSSRIFRV SRASGGKDRH SKVLTSKGLR DRRVRLSVST AIQFYDLQDR LGYDQPSKAV  120
EWLIKAAADS IAELPSLTGP FPETPRQLCD AKLGFESSSV AAAAAEADAS HTQQKMNVSM  180
SISASSTSET SKGSGLSLTR TDARVNQRVR ARERARERAK EKESETEQAV VNAGQRRRQS  240
AGNPISHPTT NNNNSSSFTE LLTGAIGGNQ TGSSPNSAPM MMDYFTNVAR PTLGSHHHHQ  300
AAAACLFLGQ TTQMGNSINM PQAFHLTTGE HHNHHQQQHH GLQHFSFGQE NLIPAGNEYD  360
LNFTISSSSP SSLAGFNNRG TLQSNSPPAA SPSSLLHHSN QQLQRYAASM EGSNNVVPAF  420
FMTTASASSA MDTNHQHHHF PTGLDGRLHL YYGDGGGRHC DHKDAKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2481135155Putative transcription factor PCF6
5zkt_B7e-2481135155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207219RVRARERARERAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875888.11e-111transcription factor TCP2
RefseqXP_015875894.11e-111transcription factor TCP2
RefseqXP_015875904.11e-111transcription factor TCP2
TrEMBLW9QCB81e-102W9QCB8_9ROSA; Uncharacterized protein
STRINGXP_010086998.11e-102(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2