PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0552s0024.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 216aa MW: 24128.8 Da PI: 5.1864

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0552s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.8	3.2e-19	6	55	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ ++g Kalax.0552s0024.1.p 6 KYRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFQTAEEAARAYDQAAILMNG 55 8***999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	8.5E-33	5	64	IPR001471	AP2/ERF domain
CDD	cd00018	9.00E-34	6	65	No hit	No description
Pfam	PF00847	4.5E-12	6	55	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-20	6	64	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.497	6	63	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-38	6	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-11	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-11	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MVPLRKYRGV RQRQWGSWVS EIRHPLLKRR VWLGTFQTAE EAARAYDQAA ILMNGRNAKT 60 NFPAAEGQQQ SGVNMPRLLS PAALSEKLRK CCKDTCPSLT CLRLDADSSN IGVWQKRAGE 120 RNGSNWVMRI ELGSANKTHN KEQKDSSISD KNKTDFDDDE VSVSVSDNLG LSENDENSKN 180 GGARDDGDDD DEEDKIALQM IEELVNWNCP TPFVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022134182.1	2e-77	ethylene-responsive transcription factor SHINE 2-like
Swissprot	Q3E958	5e-65	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A1S3CR71	5e-75	A0A1S3CR71_CUCME; ethylene-responsive transcription factor SHINE 2-like
STRING	XP_008466408.1	9e-76	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	8e-59	ERF family protein

Link Out ? help Back to Top
Phytozome	Kalax.0552s0024.1.p

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]