PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0548s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 437aa MW: 48757 Da PI: 6.3572

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0548s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ E +l d+v ++G g+W+++ r g+ R++k+c++rw ++l Kalax.0548s0019.1.p 27 KGPWTAAENAILFDYVSKHGEGNWNAVQRNSGLQRCGKSCRLRWANHL 74 79******************************************9986 PP
2	Myb_DNA-binding	54.3	3.2e-17	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++++lG++ W++ a+ m+ gRt++++k++w++ Kalax.0548s0019.1.p 80 KGAFTPEEERLILELHAKLGNK-WARMAAQMP-GRTDNEIKNYWNT 123 799*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.016	22	74	IPR017930	Myb domain
SuperFamily	SSF46689	6.25E-30	25	121	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-12	26	76	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-13	27	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-22	28	81	IPR009057	Homeodomain-like
CDD	cd00167	1.17E-9	29	74	No hit	No description
PROSITE profile	PS51294	25.889	75	129	IPR017930	Myb domain
SMART	SM00717	1.3E-16	79	127	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-16	80	123	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-26	82	127	IPR009057	Homeodomain-like
CDD	cd00167	2.21E-12	82	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MASSSSHDTT PARSSSGAGE EGVALKKGPW TAAENAILFD YVSKHGEGNW NAVQRNSGLQ 60 RCGKSCRLRW ANHLRPNLKK GAFTPEEERL ILELHAKLGN KWARMAAQMP GRTDNEIKNY 120 WNTRMKRHQR AGLAIYPTHI HSGHHRQHRL QRHRKQHHAL KSTSHTQMLD FQNQIAVSFN 180 QTSQPQSYLF TAHQAPIPSQ FNFFMEQSNS NSQSYQTSLS PAVASHSLLL TNNPPHLPPH 240 QSNYHQDPPD SSADFGFVRL LSDHRSDGML DDVFYSVEFG NENSNNQLFQ PTFKNMKQDE 300 GYPGAVTLKE TTPENSSSGL TSIGVMVVEP EPEPEPEPEP EPVVELINPQ EDELTSLIDS 360 FPAESPTPQW YRRGSSMAEI NNSSSDANGE VVLDLYPTHQ LVMPSLEAEA TDQVLSLGGS 420 TSMLWHELPS IYSSML*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MASSSSHDTT PARSSSGAGE EGVALKKGPW TAAENAILFD YVSKHGEGNW NAVQRNSGLQ  60
RCGKSCRLRW ANHLRPNLKK GAFTPEEERL ILELHAKLGN KWARMAAQMP GRTDNEIKNY  120
WNTRMKRHQR AGLAIYPTHI HSGHHRQHRL QRHRKQHHAL KSTSHTQMLD FQNQIAVSFN  180
QTSQPQSYLF TAHQAPIPSQ FNFFMEQSNS NSQSYQTSLS PAVASHSLLL TNNPPHLPPH  240
QSNYHQDPPD SSADFGFVRL LSDHRSDGML DDVFYSVEFG NENSNNQLFQ PTFKNMKQDE  300
GYPGAVTLKE TTPENSSSGL TSIGVMVVEP EPEPEPEPEP EPVVELINPQ EDELTSLIDS  360
FPAESPTPQW YRRGSSMAEI NNSSSDANGE VVLDLYPTHQ LVMPSLEAEA TDQVLSLGGS  420
TSMLWHELPS IYSSML*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-28	25	127	5	106	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	3e-70	myb domain protein 101

Link Out ? help Back to Top
Phytozome	Kalax.0548s0019.1.p