PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0548s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 446aa    MW: 49205.9 Da    PI: 8.1738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0548s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38e-114469126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +f+rtG C yG +C+++H+
  Kalax.0548s0003.1.p 44 PGEPNCIYFLRTGSCGYGTKCRYNHP 69
                         5789*********************9 PP
2zf-CCCH40.83.8e-1389114227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C ff++tGtCkyG++Ck++H++
  Kalax.0548s0003.1.p  89 GEPDCGFFMKTGTCKYGSSCKYNHPR 114
                          6899********************96 PP
3zf-CCCH36.86.5e-12137159527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C +++rtG+Ck+G+ CkF+H++
  Kalax.0548s0003.1.p 137 PCTYYMRTGQCKFGPACKFHHPE 159
                          8********************96 PP
4zf-CCCH37.63.6e-12280305227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ +GtCkyG+ Ck++H++
  Kalax.0548s0003.1.p 280 DQPECRYFMNSGTCKYGPDCKYNHPK 305
                          689*********************96 PP
5zf-CCCH30.65.6e-10325349125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          ++++lC+ ++ +G+C+ G++CkF+H
  Kalax.0548s0003.1.p 325 PGQPLCSSYSTYGICSNGPTCKFHH 349
                          589********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6194371IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-54871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-44969IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83187115IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-1089114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-692115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-493114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197132160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-6132160IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7133159IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9137159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5137158IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596278306IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5284305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6323350IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868324352IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7326349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4329351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MQDNNSNNAV AVHNESLREP SIRPKMHNNY KHQEGAVTDY PDRPGEPNCI YFLRTGSCGY  60
GTKCRYNHPT HVAQDVVYGL GGELPERDGE PDCGFFMKTG TCKYGSSCKY NHPRDRNDGS  120
PVSFNILGLP MRSEGNPCTY YMRTGQCKFG PACKFHHPEP AFPGLVFPVF GTTHLGSTES  180
SNLHIRTFPA LPIPAAAYVY DPQTQTQQPY MPLAVSPSQG FLPQQCWSTY QRNMGPVSST  240
NTRGSSPSYN SSSRCLGASG SNGQVHYLSF FTPPYPERPD QPECRYFMNS GTCKYGPDCK  300
YNHPKERIAQ MLPQPVNPLG LPFRPGQPLC SSYSTYGICS NGPTCKFHHQ VSGYPLNCGL  360
SPFPLPLPMP VFDEPIFGRR SSTVVISSET SSPSKSPKDL DWMRKPESAT ERSRHLGTNG  420
LQKSHDEEAG TTRNSSPASS TKQHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275775.11e-145PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLD7TEE81e-144D7TEE8_VITVI; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-144(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-98C3H family protein