PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0543s0035.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 438aa    MW: 47817.3 Da    PI: 5.3225
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0543s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.51.5e-091760340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Kalax.0543s0035.1.p 17 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 60
                         578*****************************667888888876 PP
2CCT67.44e-23378420143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  Kalax.0543s0035.1.p 378 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 420
                          9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0491562IPR000315B-box-type zinc finger
PfamPF006437.6E-81760IPR000315B-box-type zinc finger
CDDcd000214.23E-101862No hitNo description
PROSITE profilePS5101716.083378420IPR010402CCT domain
PfamPF062036.6E-18378420IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MTPDVKKVAN VVGGKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV  60
RLKTASFASV HGESGGHNKS SNRVPTWHSR KPRTPRGKKG GSFRSPKSDE VVRNPFYLVP  120
EAMSDDTTSF DESDGQLLFG RVPVFDSFAA ELCSPPHEAE AMEAFTDTGA ENVKASGGQR  180
REDFDEMEGF VGNFCNDLGF LPSEKDLEEF AADVETLLGT GLDDESFGID GLGLVGCNVD  240
VEGSVNCSVR GGGGGRVKEE EEEEEAEEID MAREPFVLSF DYDEEGNGAS EGEAVGGGDV  300
DVKVAKKMKI LLKLDYEGIV SAWDGSSPWT SGTRPEVDPN DCWLTRMGAC GIESHLQRLG  360
DPATGLNGRM GMLGDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR  420
CSSSFPVGSS NNVSLFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388404RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282578.11e-143PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLD7T9491e-141D7T949_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-142(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-90B-box type zinc finger protein with CCT domain