PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0543s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 268aa    MW: 30515.7 Da    PI: 7.01
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0543s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd  l++ ++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Kalax.0543s0026.1.p 19 RGSWTVEEDTMLIHHITAHGEGNWNSLARSSGLKRTGKSCRLRWLNYL 66
                         89********************************************97 PP
2Myb_DNA-binding47.15.6e-1572115146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E   + +++ ++G++ W++Ia+ ++ gRt++++k++w++
  Kalax.0543s0026.1.p  72 RGNLTPQEKSTIFQLHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 115
                          7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-221269IPR009057Homeodomain-like
PROSITE profilePS5129415.8261466IPR017930Myb domain
SuperFamilySSF466892.19E-2917113IPR009057Homeodomain-like
SMARTSM007172.8E-141868IPR001005SANT/Myb domain
PfamPF002491.4E-141966IPR001005SANT/Myb domain
CDDcd001671.75E-102166No hitNo description
PROSITE profilePS5129422.97367121IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2270119IPR009057Homeodomain-like
SMARTSM007177.2E-1371119IPR001005SANT/Myb domain
PfamPF002491.2E-1372115IPR001005SANT/Myb domain
CDDcd001676.97E-1076115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSARNCGPDE HVQQSELRRG SWTVEEDTML IHHITAHGEG NWNSLARSSG LKRTGKSCRL  60
RWLNYLKPDI KRGNLTPQEK STIFQLHSKW GNRWSKIAQQ LPGRTDNEIK NYWRTRMQNQ  120
ARQLKRVQSD RFLESVRGFW VPTTTLDVKG DADYSSLVSN SSSQQQLKNR HHHTLSCSSP  180
SSFVFPREAD DSMGFLELKT VVDPPNSPSA NTTAGAYKYP EFYHSLETMS AAADDDCGLL  240
QAARDDWMAD DETTDTAWNT DELWQFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261212120128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063702.16e-78transcription factor MYB62-like
TrEMBLA0A2C9UKL01e-72A0A2C9UKL0_MANES; Uncharacterized protein
TrEMBLA0A3S3QHZ98e-73A0A3S3QHZ9_9MAGN; Transcription factor MYB108-like protein
STRINGEOY001193e-72(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.18e-70myb domain protein 116