PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0542s0012.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 439aa MW: 48798.5 Da PI: 5.771

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0542s0012.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	4.8e-11	255	298	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 n+ Er+RR + +++ L++llP++ K++ a+i+ +A++YIk+L Kalax.0542s0012.3.p 255 NATERKRRVEFSGKYDALKSLLPSP-----NKPDRASIVGEAIDYIKEL 298 99********************8.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.516	249	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-12	254	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-11	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.41E-11	255	303	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-11	255	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	255	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MAASKDTSSF DATSVPEEGL HVANMMASST TNSFEENMKF PGEEFSHSSH KLGFGIMDNH 60 YYASNSSADN LMQEVLCDSN QDPAGDQMSW NAHGVNEMQN GHRGFHVPNL QDHPYPATHE 120 LLDLFNLPRC SATSFVPNSL ISFSNPVHKV SNFNSSLGFL GDHTQPENMP ASANLYDPLY 180 QMSPPPQQPS IRELIQSTLP RCCNFSGLNG SLYGGEDERD VVGGAYQDLE GRDFDSEVLE 240 FTGEKPRKGK GKEGNATERK RRVEFSGKYD ALKSLLPSPN KPDRASIVGE AIDYIKELKR 300 TVSELKSLVE KKKCGKERNK KPKTDEDGFG DYNGSLRCSW LQRKSKDAEV DVRIIDDEVT 360 IKLVQRKRIN CLLLVTKILD ELQLDLQHVA GGHAGDFYSF LFNTKIYEGS YVYATGIANR 420 LLEAVERQYA AVPPSSKY*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MAASKDTSSF DATSVPEEGL HVANMMASST TNSFEENMKF PGEEFSHSSH KLGFGIMDNH  60
YYASNSSADN LMQEVLCDSN QDPAGDQMSW NAHGVNEMQN GHRGFHVPNL QDHPYPATHE  120
LLDLFNLPRC SATSFVPNSL ISFSNPVHKV SNFNSSLGFL GDHTQPENMP ASANLYDPLY  180
QMSPPPQQPS IRELIQSTLP RCCNFSGLNG SLYGGEDERD VVGGAYQDLE GRDFDSEVLE  240
FTGEKPRKGK GKEGNATERK RRVEFSGKYD ALKSLLPSPN KPDRASIVGE AIDYIKELKR  300
TVSELKSLVE KKKCGKERNK KPKTDEDGFG DYNGSLRCSW LQRKSKDAEV DVRIIDDEVT  360
IKLVQRKRIN CLLLVTKILD ELQLDLQHVA GGHAGDFYSF LFNTKIYEGS YVYATGIANR  420
LLEAVERQYA AVPPSSKY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028113214.1	1e-128	transcription factor bHLH91-like
Refseq	XP_028113215.1	1e-128	transcription factor bHLH91-like
TrEMBL	A0A2I4F185	1e-125	A0A2I4F185_JUGRE; transcription factor bHLH91-like isoform X2
STRING	cassava4.1_028473m	1e-121	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-75	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0542s0012.3.p