PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0540s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 187aa    MW: 20335.8 Da    PI: 5.9364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0540s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-183279253
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++aa+  l
  Kalax.0540s0012.1.p 32 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDAAAMWL 79
                         69****998.**********843...6*********************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-213290IPR016177DNA-binding domain
SMARTSM003806.1E-343295IPR001471AP2/ERF domain
PfamPF008474.8E-123279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-313290IPR001471AP2/ERF domain
PROSITE profilePS5103222.553289IPR001471AP2/ERF domain
CDDcd000183.07E-203391No hitNo description
PRINTSPR003676.4E-103344IPR001471AP2/ERF domain
PRINTSPR003676.4E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSDSSMSDSS SSAELKAHPR KHPKQSSAKH PTYRGVRMRN WGKWVSEIRE PRKKSRIWLG  60
TFPSPEMAAR AHDAAAMWLK GASATLNFPE LAGLLPRPES SSPRDVQAAA AKAAAMDWET  120
GKHQDEQLGD IVELPSLDEF GNGCGGSWSH APPWLVSVED YGDQMIPVVA DEQSCGGCFE  180
GLLWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1728891072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022951619.11e-53dehydration-responsive element-binding protein 3-like
SwissprotQ391271e-49TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A200QDK72e-55A0A200QDK7_9MAGN; AP2/ERF domain
STRINGXP_004291182.18e-52(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]