PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0539s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 812aa    MW: 90386.1 Da    PI: 6.0251
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0539s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.23.5e-36151226176
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                          +Cqv+gCe+d+se+k yh+rh+vC ++++a++v+++g+++r+CqqC++fh ls+fD+ekrsCrr+L++hn+rrr+k
  Kalax.0539s0017.1.p 151 RCQVPGCEVDISELKGYHKRHRVCLKCANASTVALDGESKRYCQQCGKFHILSDFDDEKRSCRRKLERHNNRRRRK 226
                          6************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-27148213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.171149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-33150229IPR004333Transcription factor, SBP-box
PfamPF031101.7E-27152226IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MEPSSPKPQL LKPDSQSQIL PQSESELAAS SHRPKAAGMD LGFPAMEESE STTLFDWGDL  60
LDFTVDEDQF ALPSPSPFGS DEAPVAGFEE SADRVRKRDP KLTCENFLAG RVPCACPEMD  120
ALLAEEEELR GTGKKRARTV RSAAAAGVVA RCQVPGCEVD ISELKGYHKR HRVCLKCANA  180
STVALDGESK RYCQQCGKFH ILSDFDDEKR SCRRKLERHN NRRRRKLTNA KGPTEDDIPG  240
DPLVEEFGCD VEAGKAIETL TTKTTPDEAL VRSEDVLIAN TCSTFSSQDT RSDSPGSDET  300
NMEGVKERSR YGPSSSNGDN KSAFSSVCPT GRISFKLYDW NPAEFPRRLR HQIFQWLASM  360
PVELEGYIRP GCTILTVFLS LPKFMWVELF KDPASQLQDF ISAPGRLLSG KGTIHVYLDD  420
MRFLIARDGT FVKKVHTDVH APKLHYVHPT FFESGKPMEF VACGSNLLQQ KFRFLVSFQE  480
KYVANECYLP FSPGHSELES TCHFNHQKYK IYAPLIDSDA FGPAFVEVEN QSGLSNYIPV  540
LIGDAEVCAE MERIQQSCVR SFISESSVCE PDNCEVYEAI HSAVSEFVLD IAWLLKKPAS  600
ESLQDNLTSS QIKRYDSVLS YLLLNDSKVI LDRVLKSLSI RISNAEKSSP GYATCEDGIR  660
LLQKRMDQAS NTLRLKRSGL TSPSKNSFSS DALENNIYSE RTSAIHIDEE DTNSSPEHKS  720
VPLEDSTRAQ RSETVPLLCV DDSVKTKHMD KWPRQSCSAI ISSTRIVPHT RTTFSLAAIA  780
LVCFGVCAVM IHPDKVGQFA VTVRRCLFDR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-40147232186squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212224RRKLERHNNRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277039.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLF6HDJ00.0F6HDJ0_VITVI; Uncharacterized protein
STRINGVIT_05s0020g02160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7