PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0535s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20473.8 Da PI: 4.4539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 23 | 71 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +grWv+eIr+p gk++r++lg+f tae+Aa a++ a+++l+g Kalax.0535s0005.1.p 23 YRGVRKRR-WGRWVSEIREP---GKKTRIWLGSFETAEMAAMAYDVAALYLRG 71 9****887.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.92 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 22 | 80 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-38 | 22 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 22 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-13 | 23 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.33E-31 | 23 | 81 | No hit | No description |
PRINTS | PR00367 | 2.1E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MADDEDTIQY GRSSRMSSSM TMYRGVRKRR WGRWVSEIRE PGKKTRIWLG SFETAEMAAM 60 AYDVAALYLR GQDARLNFPE LAGTLPCPRS SSAEDIRAAA QEAYTFWSQK EERDQRAGEC 120 SSSGLARVGL SESQIRAINE SPLDSPKMWM QMGGGGAMFF DNNDAMMTDE MENDDDFSLW 180 D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 23 | 79 | 6 | 63 | ATERF1 |
3gcc_A | 2e-17 | 23 | 79 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000047.1 | 6e-60 | PREDICTED: ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9LQ28 | 1e-44 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A0D2SET9 | 9e-56 | A0A0D2SET9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G116500.1 | 1e-56 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 2e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0535s0005.1.p |