PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0530s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CO-like

Protein Properties

Length: 389aa MW: 42498.1 Da PI: 5.8578

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0530s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.8e-08	27	58	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+++++ + lfC+ ++ +lC C + +H Kalax.0530s0001.1.p 27 KPCDLCKSASALLFCKPDSAFLCVACDTRIHA 58 67****************************93 PP
2	zf-B_box	26.2	1.7e-08	68	114	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ +++ C+ + lC +C +H+ H++vpl Kalax.0530s0001.1.p 68 RLWMCEVCEQVPASVTCKADAAALCVSCDADIHSAnplsrkHERVPL 114 5789*****************************66999999999986 PP
3	CCT	71.2	2.6e-24	317	360	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrFvk++ Kalax.0530s0001.1.p 317 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFVKRT 360 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.1E-11	24	71	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.755	24	71	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.8E-6	27	67	IPR000315	B-box-type zinc finger
CDD	cd00021	5.79E-8	28	71	No hit	No description
PROSITE profile	PS50119	10.722	67	114	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	69	114	IPR000315	B-box-type zinc finger
CDD	cd00021	1.67E-9	70	114	No hit	No description
SMART	SM00336	2.3E-9	72	114	IPR000315	B-box-type zinc finger
Pfam	PF06203	2.6E-18	317	359	IPR010402	CCT domain
PROSITE profile	PS51017	16.797	317	359	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MIDIEENCVK GYPVVGGGLG VWPMAAKPCD LCKSASALLF CKPDSAFLCV ACDTRIHAVN 60 KLASRHERLW MCEVCEQVPA SVTCKADAAA LCVSCDADIH SANPLSRKHE RVPLVPFFES 120 AESIIKKSSA ANAAAAKGNG SSNLVNFLVP GADEEEDHED DVSWFIPPQK AALTAAMDPI 180 EVKCAGVELF YTDFDHLLDF ENPNQLYLNF KNNQHVAGSD SVVPVQIKPE IVSGIGSSDR 240 CFDIDFCKSK LPFYNFDQSI NHSVSSSSMD IALVPDGASA SDISYSLGKH VNSGGGEALN 300 INNSLATQAT QLTGLDREAR VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFVKRT 360 DPDQELDRMM FSGGSIDFFE GYGVVPSY*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MIDIEENCVK GYPVVGGGLG VWPMAAKPCD LCKSASALLF CKPDSAFLCV ACDTRIHAVN  60
KLASRHERLW MCEVCEQVPA SVTCKADAAA LCVSCDADIH SANPLSRKHE RVPLVPFFES  120
AESIIKKSSA ANAAAAKGNG SSNLVNFLVP GADEEEDHED DVSWFIPPQK AALTAAMDPI  180
EVKCAGVELF YTDFDHLLDF ENPNQLYLNF KNNQHVAGSD SVVPVQIKPE IVSGIGSSDR  240
CFDIDFCKSK LPFYNFDQSI NHSVSSSSMD IALVPDGASA SDISYSLGKH VNSGGGEALN  300
INNSLATQAT QLTGLDREAR VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFVKRT  360
DPDQELDRMM FSGGSIDFFE GYGVVPSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024928544.1	1e-132	zinc finger protein CONSTANS-LIKE 5
Refseq	XP_024928545.1	1e-132	zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	1e-102	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A0L9TF49	1e-123	A0A0L9TF49_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R7U8	1e-123	A0A0S3R7U8_PHAAN; Uncharacterized protein
TrEMBL	B9T618	1e-122	B9T618_RICCO; Zinc finger protein, putative
STRING	XP_002533687.1	1e-123	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-97	CONSTANS-like 5

Link Out ? help Back to Top
Phytozome	Kalax.0530s0001.1.p

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]