PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0528s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 675aa    MW: 75091.9 Da    PI: 6.5839
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0528s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.5e-24127227198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv+a++L +gD++vF   
  Kalax.0528s0015.1.p 127 FCKVLTASDTSTHGGFSVLRKHATEClppldMSQPTPTQELIGKDLHGMEWRFKHIFRGQPRRHLLTTGWSTFVSAKRLVAGDSFVFL-- 214
                          99****************************9777777889************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Kalax.0528s0015.1.p 215 RGEDGELRVGVRR 227
                          4499*******98 PP
2Auxin_resp89.84.8e-30252330182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          a+ha++ +++F+v+Y+Pr+  s+Fvv+v+k+++a k+ + vG Rfkm+fe++d +er +sGt+vgv ++++ +W +SkWrsL
  Kalax.0528s0015.1.p 252 ASHAVTAQTIFQVFYKPRK--SQFVVSVNKYLEANKSGFGVGKRFKMRFEGDDLPERWFSGTIVGVDNISQ-QWADSKWRSL 330
                          689***************6..9**********************************************666.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-36116241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-40121239IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-20125227No hitNo description
PROSITE profilePS5086312.012127229IPR003340B3 DNA binding domain
PfamPF023621.3E-22127227IPR003340B3 DNA binding domain
SMARTSM010197.7E-23127229IPR003340B3 DNA binding domain
PfamPF065074.1E-27252330IPR010525Auxin response factor
PfamPF023098.2E-8548599IPR033389AUX/IAA domain
SuperFamilySSF542773.14E-13558639No hitNo description
PROSITE profilePS5174526.665563644IPR000270PB1 domain
PfamPF023092.1E-6609648IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MMMMPNRCTN LSGEGVGGDG GLYEELWKAC AGPLVDVPRE RERVYYFPQG HLEQLETSTN  60
QEIDQRITMF NLPSKILCKV LNVYLMAEPE TDEVYAQITL IPEPDQTEPT KPDPCLPEPR  120
RPTVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMSQ PTPTQELIGK DLHGMEWRFK  180
HIFRGQPRRH LLTTGWSTFV SAKRLVAGDS FVFLRGEDGE LRVGVRRLAC QQSNMPSVIS  240
SHSIQLGVLA SASHAVTAQT IFQVFYKPRK SQFVVSVNKY LEANKSGFGV GKRFKMRFEG  300
DDLPERWFSG TIVGVDNISQ QWADSKWRSL RVQWDEPAAI SRPDTVSPWE IENLTPSVPS  360
CISPAIPSKN KRLRPPGDMQ VPETPTASGL WHHKPEDKNV AHFSSNNGSC TSRAYTDGGW  420
LSAQGHHSKL KSEHIISNGS SSNHHTEDSL HAVAWPAVMA QPHVHMLKLN SDPLFDSGEA  480
RKKVDAPISC RLFGIELLNP STSTPTEKPV MQPVCASVGS AEGNIPDTPS AAESEQNSEL  540
SKTFKFKQLE QANGKQSFST SARSRTKVQM QGVPVGRAVD LTTLEGYDHL IDELEDMFEI  600
KGELRPRNKW EIVFTDDEGD MMLVGDDPWT EFCSMVRRIF ICSSQEMKKL RSGSKHSVPS  660
IELGETATIL SSDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1691535413355Auxin response factor 1
4ldw_A1e-1691535413355Auxin response factor 1
4ldw_B1e-1691535413355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659520.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLD7TVI50.0D7TVI5_VITVI; Auxin response factor
STRINGVIT_02s0025g01740.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9