PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0527s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 261aa    MW: 28144.6 Da    PI: 7.4554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0527s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-1473120355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h e+E+rRRdriN  + +Lr+l+Pk+      K++Ka+ L ++++++k Lq
  Kalax.0527s0029.1.p  73 KSHTEAEKRRRDRINGHLLTLRKLVPKS-----DKMDKAALLARVIQHVKGLQ 120
                          79*************************8.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1368124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.20570119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-1373120No hitNo description
PfamPF000101.7E-1173120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1473122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1376125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.872161238IPR002912ACT domain
CDDcd048732.43E-4163208No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-4163209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MENFRCSGWF EAGDFAHSQS QMTAGFSSSA PLQATDDTGM FSSVQLQGLP SYWPGFEDGF  60
GDGRAAAAAS SSKSHTEAEK RRRDRINGHL LTLRKLVPKS DKMDKAALLA RVIQHVKGLQ  120
GEAAEVGKAL TVPTDVDEVR ISTYAAAAES TSGSQTDIFM EASLCCEDRP ELFAEIDQAL  180
QSLNLSTARV EMGSLGGRVR IILLLSGNGI RNDSCSTQNR MINLKGSLNV ALNRIVNSTP  240
SVSSYRVTSK RQRFFLPSDT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-43bHLH family protein