PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0527s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 278aa    MW: 31737.7 Da    PI: 8.7347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0527s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.6e-102671346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT eE +l+  a + + ++   +W+++a++++ g++ k++++ +  
  Kalax.0527s0004.1.p 26 YWTREENKLFESALAIYDKNtpdRWEKVAQMIP-GKSVKDVINQYKE 71
                         5********************************.*********9975 PP
2Myb_DNA-binding414.4e-13124169247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++WT++E+ +++ +  ++G+g+W++I+r +   +t+ q+ s+ qky
  Kalax.0527s0004.1.p 124 LPWTEDEHRQFLMGLLKHGKGDWRSISRNFVASKTPTQVASHAQKY 169
                          69*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-52072IPR009057Homeodomain-like
PROSITE profilePS5129310.5562275IPR017884SANT domain
SMARTSM007176.6E-112375IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-142581IPR009057Homeodomain-like
PfamPF002492.1E-82671IPR001005SANT/Myb domain
CDDcd001671.58E-92772No hitNo description
PROSITE profilePS5129415.859118174IPR017930Myb domain
SuperFamilySSF466895.08E-16120174IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-16121172IPR006447Myb domain, plants
SMARTSM007176.6E-10122172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9124168IPR009057Homeodomain-like
CDDcd001671.03E-8125170No hitNo description
PfamPF002491.4E-10125169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MIMDTMYQTF QLQNSNWLPQ KSHSSYWTRE ENKLFESALA IYDKNTPDRW EKVAQMIPGK  60
SVKDVINQYK ELEDDVINIE AGLVPTPGYL TSSFTLELGD DRDFDVLRKK SRARSADREK  120
KKGLPWTEDE HRQFLMGLLK HGKGDWRSIS RNFVASKTPT QVASHAQKYF LRLNSGLKDK  180
RRPSIHDITT TNLSTAPPSD DSGVAAFDQF VVLPPREREQ NVALDWNQHG NLSVMAFEPN  240
LPPAPYESFY GTAHHGIHVG SHHPMFEVQS ARQRIRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-16271021186RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107121RKKSRARSADREKKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821689.11e-106PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2N9H1W51e-110A0A2N9H1W5_FAGSY; Uncharacterized protein
STRINGVIT_13s0019g03370.t011e-105(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-83MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]