PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0524s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 303aa    MW: 33801 Da    PI: 6.5052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0524s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14112159355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+h+e+Er+RR+riNs + +Lr+llP+      +K +Ka+ L ++++++k+L+
  Kalax.0524s0003.1.p 112 RNHSEAERKRRERINSHLTKLRSLLPNT-----TKTDKASLLAEVIQCVKHLK 159
                          78*************************9.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.374109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15112170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-13112161No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14113167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.4E-5195251No hitNo description
CDDcd048731.40E-5195242No hitNo description
SuperFamilySSF550217.97E-6195251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMEDNDVYGS QTFHHNHLLF HQHQQQDITI MQPPFSSSSS FDPAYNPFLV PPPPSYSHSC  60
TYTPDHYMSS NLSTNDHGAL GSSSLLGSML SQEFEKMRSM DMMEAKALAA SRNHSEAERK  120
RRERINSHLT KLRSLLPNTT KTDKASLLAE VIQCVKHLKQ QTSALSELHT VPTEADDLTF  180
ETCATRDGQL LIKASLCCED RSDVLQDLIS TFQALNLKIV KADITTFGGR MKYVVFIVGD  240
SDQTCGQIED AADQPFVVTI QEAFRDVMGR SLGKLDNKGP SSDYGFKRRR VKGECQRSLD  300
AN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122ERKRRE
2286290KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224425.15e-69PREDICTED: transcription factor bHLH30 isoform X1
RefseqXP_017224426.15e-69PREDICTED: transcription factor bHLH30 isoform X1
SwissprotQ9S7Y12e-53BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A175YGM91e-67A0A175YGM9_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]