PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0517s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 394aa MW: 44121.8 Da PI: 8.8 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.5 | 1.4e-33 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++++lm++ gLtl+h+kSHLQkYRl Kalax.0517s0012.1.p 47 KPRLKWTPDLHERFIEAVHQLGGPDKATPKSVMKLMGISGLTLYHLKSHLQKYRL 101 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.985 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 45 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-16 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-24 | 47 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-11 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-24 | 146 | 192 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MYHHHQNHGK NFHSSSRNPI PPERHLFLQP GANGPGDSGL VLSTDAKPRL KWTPDLHERF 60 IEAVHQLGGP DKATPKSVMK LMGISGLTLY HLKSHLQKYR LSKNLHGQPN GSTNKLVTAA 120 AGQKIPEATE TTVSSPSTGS QSNKLQISET LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSVLEKAQ ETLGRQNLGT VGLEAAKAQI NDLVSKVSTQ CLNSPFSVNK GELHALCTQH 240 LQMTQQANGS LDNCLTNGSH NRHSVGFEMM QCKQNWHNDH RMILPSFAGD TERQVLLMED 300 SPSGLSMGIG LHQEKRDKRS TYPEPKIRKQ DDADELLFKR PSNKNQSLNM ENERLSLGCR 360 MPSMEPKLDL NSHEEHDASR GCKQFDLNGF SWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901042.1 | 1e-162 | LOW QUALITY PROTEIN: myb-related protein 2-like | ||||
Swissprot | Q9SQQ9 | 1e-118 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A2P2LI15 | 1e-157 | A0A2P2LI15_RHIMU; Myb family transcription factor family protein | ||||
STRING | POPTR_0019s04820.1 | 1e-156 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-120 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0517s0012.1.p |
Publications ? help Back to Top | |||
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