PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0509s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 361aa    MW: 39816.8 Da    PI: 9.7899
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0509s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.4e-1373121155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f+ ++eAa+ ++ a+++++g
  Kalax.0509s0022.1.p  73 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFDEEDEAARVYDLAAQRFRG 121
                          689***9788.8*********3.....5**********99*************98 PP
2B3962.5e-30195295190
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f+k+ tpsdv+k++rlv+pk++ae+h           ++++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v 
  Kalax.0509s0022.1.p 195 FEKAVTPSDVGKLNRLVIPKQHAEKHfqlqsrgspAASSAKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLLAGDVVR 284
                          89*************************999988775556699************************************************ PP

                          EEE-.SS.SEE CS
                   B3  82 Fkld.gr.sef 90 
                          F+ + g  +++
  Kalax.0509s0022.1.p 285 FYKStGVaDRT 295
                          *9443444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.33E-2373129No hitNo description
PfamPF008477.2E-873121IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1573129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-1874129IPR001471AP2/ERF domain
SMARTSM003801.9E-2674135IPR001471AP2/ERF domain
PROSITE profilePS5103219.49374129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.3E-36191289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-28192287IPR015300DNA-binding pseudobarrel domain
CDDcd100172.77E-27193288No hitNo description
PfamPF023622.1E-27195298IPR003340B3 DNA binding domain
SMARTSM010191.1E-20195305IPR003340B3 DNA binding domain
PROSITE profilePS5086313.69195305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDLNCIVDTG NTATGEDSSS TSSSLIIISP TSSPLTPTAP KTTHVNPLSR MGSGASVVID  60
AEAESSGRRL VSSRFKGVVP QPNGRWGAQI YEKHQRVWLG TFDEEDEAAR VYDLAAQRFR  120
GRDAVTNYEP LATDEAGSVE YSFLTSHSKA EIVDMLRKHT YAEELEQRKR HSASQASRPD  180
PRLSLGSGLA REPLFEKAVT PSDVGKLNRL VIPKQHAEKH FQLQSRGSPA ASSAKGVLLN  240
FEDAGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLLAG DVVRFYKSTG VADRTQLHID  300
FKSRTALMMI TASQPSYATT AAPNCAVVRL FGVNIVKSSD DNKRKMEMEL LGFETCKSRR  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-5119231611128DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524409.11e-140AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-122RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLB9SEJ01e-139B9SEJ0_RICCO; DNA-binding protein RAV1, putative
STRINGXP_002524409.11e-140(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-121related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]