PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0507s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 257aa MW: 27891 Da PI: 5.3182 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.5 | 4.9e-07 | 3 | 30 | 4 | 31 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCll 31 ++C+ +e ++lfC ++ lC++C + Kalax.0507s0024.1.p 3 TICDVCEGAAAILFCAADEAALCQSCDD 30 68******99****************86 PP | |||||||
2 | zf-B_box | 27.2 | 8.2e-09 | 78 | 115 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 +C+ +e+ ++ ++Ce +++ lC +C + H g H Kalax.0507s0024.1.p 78 ARCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrkH 115 69**************************9996545556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.2 | 1 | 36 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.532 | 1 | 28 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.03E-4 | 3 | 29 | No hit | No description |
Pfam | PF00643 | 4.2E-5 | 3 | 30 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.399 | 75 | 120 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-10 | 75 | 120 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.0E-7 | 78 | 115 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.81E-7 | 79 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRTICDVCEG AAAILFCAAD EAALCQSCDD KVACLMLVGF WCEYMGTVFT DFDALVHMCN 60 KLASRHVRVR LAAPSAVARC DICENAPAFF YCEVDGTSLC LQCDMIVHVG GKRKHGRYLI 120 LRQKVEFPGG KPGQLEDPAS QPLDTGESNE GSKNATRDHQ QNHESSPMPI IDSNGDSNAK 180 RDTKMIDLNM KPQLILKPLV RPLICSSAGK AENLEVSDIH TPVCALTSLP SIMTLFIEIE 240 IGFQQPNQQT PNAASS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889654.1 | 4e-84 | B-box zinc finger protein 18-like isoform X4 | ||||
Swissprot | C0SVM5 | 1e-63 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1R3GG33 | 2e-81 | A0A1R3GG33_COCAP; Zinc finger, B-box | ||||
TrEMBL | A0A1R3HVT3 | 8e-82 | A0A1R3HVT3_COCAP; Zinc finger, B-box | ||||
STRING | VIT_04s0023g03030.t01 | 7e-82 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.3 | 1e-67 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0507s0024.1.p |