PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0503s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 294aa    MW: 33124.3 Da    PI: 6.7965
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0503s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox154.2e-052462752554
                          --HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  25 psaeereeLAkklgLterqVkvWFqNrRak 54 
                          ++++++++L +++gL+ +q+ +WF N+R +
  Kalax.0503s0029.1.p 246 LQEDDKAKLVEETGLQLKQINNWFINQRKR 275
                          6788999*********************87 PP
2ELK25.53e-09178199122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  Kalax.0503s0029.1.p 178 ELKIELKQGFKSRIEDVREEIL 199
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-141963IPR005540KNOX1
PfamPF037904.9E-142162IPR005540KNOX1
SMARTSM012561.6E-576120IPR005541KNOX2
PROSITE profilePS512139.132178198IPR005539ELK domain
SMARTSM003894.1E-5200283IPR001356Homeobox domain
SuperFamilySSF466892.2E-8201284IPR009057Homeodomain-like
CDDcd000868.02E-9201278No hitNo description
Gene3DG3DSA:1.10.10.604.8E-23205279IPR009057Homeodomain-like
PROSITE profilePS500718.843244279IPR001356Homeobox domain
PfamPF059202.9E-10248275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MIGSSGLAGE ASSSFLSVDR LKAEIASHPL YQQLLSAHVD CLYVATPTHH RPMIDAQLAN  60
SHNLGLLTSC ASAAHHSLSS HDRHDLDTFM DQLETHVKVD ALEAVMACRA IENAFQALTG  120
VTLGAASGAT MSDEEDEDED LELHHHHHHH HHSSNDMIMG FGLPTESERT LMERVRQELK  180
IELKQGFKSR IEDVREEILR KRRAGKLPSD TTSVLKNWWQ QHSKWPYPTV SCPCDVVIIT  240
EGVKWLQEDD KAKLVEETGL QLKQINNWFI NQRKRNWHVA SQSVTSLKSK RKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272292RKRNWHVASQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022738794.11e-125homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-112KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A371IAJ71e-123A0A371IAJ7_MUCPR; Homeobox protein knotted-1-like 7 (Fragment)
STRINGGorai.003G163800.11e-121(Gossypium raimondii)
STRINGGorai.004G206600.11e-121(Gossypium raimondii)
STRINGEOY245901e-122(Theobroma cacao)
STRINGGLYMA11G02960.11e-122(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-106KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]