PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0496s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 286aa    MW: 32250.9 Da    PI: 6.9476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0496s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.3e-151058148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l +++ ++Gg+ +W++++ ++g+ R +k+c++rw +yl
  Kalax.0496s0013.1.p 10 RGLWSPEEDEKLRNYILRHGGHgCWSSVPVEIGLQRNGKSCRLRWINYL 58
                         788******************9*************************97 PP
2Myb_DNA-binding27.29e-0967902448
                         HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                         W+ Ia++++ gRt++++k++w+++l
  Kalax.0496s0013.1.p 67 WSQIAQKLP-GRTDNEIKNYWHTHL 90
                         *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20367IPR009057Homeodomain-like
PROSITE profilePS5129422.02562IPR017930Myb domain
SMARTSM007176.5E-12992IPR001005SANT/Myb domain
PfamPF002491.7E-131058IPR001005SANT/Myb domain
SuperFamilySSF466892.64E-221091IPR009057Homeodomain-like
CDDcd001677.50E-91358No hitNo description
PROSITE profilePS500906.8646190IPR017877Myb-like domain
PfamPF002491.6E-66790IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-136891IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGSEKPKHRR GLWSPEEDEK LRNYILRHGG HGCWSSVPVE IGLQRNGKSC RLRWINYLRP  60
GLKRGMWSQI AQKLPGRTDN EIKNYWHTHL KKRSARAFSL APKTSQELIN SWSTSVSSSL  120
SSPSSYSSKP LTQVPISFEF CHTFQASSAC TEPAVQDHDH HTMLSSGLNG FPNDGIQSSL  180
PKLFFEEWLS VERTNTSNQQ LNASDDQLAA TSILMGDTFM DNEFLQHERS SALLDFESHR  240
GGNWADDVIS YPDLCLDDNL TYGYSNFGIS MDHDKCNGFK SAMWP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022734679.15e-59transcription factor LAF1-like
TrEMBLA0A4D6UZA51e-61A0A4D6UZA5_9ROSI; MYB transcription factor 4
STRINGGorai.007G011100.11e-55(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-44myb domain protein 18