PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0496s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 38209.6 Da PI: 6.872 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 7.1e-15 | 16 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l +++ ++G++ +W++++ ++g+ R +k+c++rw +yl Kalax.0496s0012.1.p 16 KGLWSPEEDEKLRNYILRHGSHgSWSSVPIEIGLQRNGKSCRLRWINYL 64 678********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3.1e-13 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+e + ++ lG++ W+ Ia++++ gRt++++k++w+++l Kalax.0496s0012.1.p 70 RGMFSIDEEETIFALHWDLGNK-WSQIAQKLP-GRTDNEIKNYWHTHL 115 678999****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.686 | 11 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-25 | 13 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 15 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-14 | 16 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-20 | 17 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-8 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 22.699 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-10 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-11 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-8 | 76 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MALDKPKKVP KPKHRKGLWS PEEDEKLRNY ILRHGSHGSW SSVPIEIGLQ RNGKSCRLRW 60 INYLRPGLKR GMFSIDEEET IFALHWDLGN KWSQIAQKLP GRTDNEIKNY WHTHLKKRIT 120 GTFSSTPKTS QELINSWSTN VSSSLSSPSS YSSKPLTQVP SFESCHTFQA SSACTEPAVH 180 DHDHHTMLSS GLNGFPNDGI QSSLPKLFFE EWLSVERTNT SNQQLNASDG QLAASILMGD 240 TFMDNNEFLQ HERSSALDFQ SGQGGNWAND IVSYPDLCLD GSLADGYSNF GISNDHDEFR 300 SDPRPQLQRL YLVPIYLVPA HSHFWEFHLP PYGILHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-21 | 12 | 119 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022774162.1 | 4e-73 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 3e-53 | LAF1_ARATH; Transcription factor LAF1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 8e-55 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0496s0012.1.p |
Publications ? help Back to Top | |||
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