PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0495s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 154aa    MW: 17453.7 Da    PI: 9.2
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0495s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-172978255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  Kalax.0495s0025.1.p 29 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFLLRG 78
                         69*****99.**********9...336*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.0492986IPR001471AP2/ERF domain
SMARTSM003806.6E-352992IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-202987IPR016177DNA-binding domain
PRINTSPR003671.1E-113041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-303087IPR001471AP2/ERF domain
CDDcd000183.76E-263087No hitNo description
PfamPF008472.9E-103077IPR001471AP2/ERF domain
PRINTSPR003671.1E-116888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MMEGGGDRAE CCVNVEARNR KQRRQQEKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYT  60
TPIAAARAYD TAVFLLRGPS ARLNFPECIA KEDDEMREVS AAFIRKKATE VGARVDAHET  120
AGVQVPSSES KSRRLVIKPD LNEYPSPDET DED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-152886463ATERF1
3gcc_A3e-152886463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819909.11e-68PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC302e-48RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2I4EKJ13e-67A0A2I4EKJ1_JUGRE; ethylene-responsive transcription factor RAP2-1-like
STRINGXP_009614221.12e-67(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.18e-51related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]