PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0494s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27684.1 Da PI: 7.744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.6e-19 | 78 | 126 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+g Kalax.0494s0025.1.p 78 YRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAATAYDTAAYILRG 126 9******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 77 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-34 | 77 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 77 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.63E-22 | 78 | 136 | No hit | No description |
Pfam | PF00847 | 7.4E-12 | 78 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVSSAASTSL FFPIWPQYET QPSTTDWPEI SQTSTSHQSN DGSREYWLSA RKTQPMKYTT 60 GGNMQQKAST STSQGKAYRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA EDAATAYDTA 120 AYILRGDYAQ LNFPDQKHQL NSNSLSGSTK ALLEAKLQAI ESQAQRKKTV EDPVSLQSSE 180 PSQISLKNSS MEDLKLKVLR EVPLKKELIE LDNKFSGEVL GDMEGGGGIQ LSRMPSLDMD 240 MIWDAIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 73 | 134 | 1 | 63 | ATERF1 |
3gcc_A | 3e-21 | 73 | 134 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041894.1 | 9e-74 | PREDICTED: ethylene-responsive transcription factor ERF062-like isoform X2 | ||||
Swissprot | Q9SVQ0 | 2e-63 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A068URR2 | 8e-72 | A0A068URR2_COFCA; Uncharacterized protein | ||||
TrEMBL | A9PL93 | 2e-71 | A9PL93_POPTR; RAP2-like protein | ||||
STRING | POPTR_0017s08250.1 | 2e-72 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 5e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0494s0025.1.p |