PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0493s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 320aa    MW: 35602.3 Da    PI: 7.9215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0493s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-0760104244
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                           +W+ eE + + +a + + ++   +W ++a++++ g+t  +++  +
  Kalax.0493s0034.1.p  60 SKWSHEENKMFENALAVYDKDspdRWQKVAAMIP-GKTVGDVVKQY 104
                          58********************************.***99998776 PP
2Myb_DNA-binding44.63.4e-14176220347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Kalax.0493s0034.1.p 176 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 220
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.08157112IPR017884SANT domain
SMARTSM007171.2E-758110IPR001005SANT/Myb domain
PfamPF002494.2E-660104IPR001005SANT/Myb domain
SuperFamilySSF466891.04E-1060114IPR009057Homeodomain-like
CDDcd001678.83E-761107No hitNo description
PROSITE profilePS5129420.486169225IPR017930Myb domain
SuperFamilySSF466898.97E-17170224IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17172224IPR006447Myb domain, plants
SMARTSM007175.3E-13173223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12173220IPR009057Homeodomain-like
PfamPF002491.2E-12176220IPR001005SANT/Myb domain
CDDcd001672.16E-11176221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKFEMEAEME IRSSGSNPNL NSYGYPEDHH QQPQQQHSQQ QNQTQRRQHR KQHHQVESSS  60
KWSHEENKMF ENALAVYDKD SPDRWQKVAA MIPGKTVGDV VKQYEELEAD VSSIEAGLVP  120
VPGYTCPAFT LDWAGGSGGG WSQSGEGFSH GYGGVNGGKR LASVRGLEQE RKKGVPWTEE  180
EHKLFLLGLK KYGKGDWRNI SRNFVITRTP TQVASHAQKY FIRQLSGGKD KRRASIHDIT  240
TVNLNESQTL SPDQLARGQH SPDMPFQWGN QASTGSGGSM DFNGAYGFNS SRSGMLDSYM  300
GSQSLGAFQM QSAMHYPQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1658124773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278855.11e-114transcription factor DIVARICATA
SwissprotQ8S9H71e-108DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P5CP361e-111A0A2P5CP36_TREOI; GAMYB transcription factor
STRINGEOY338011e-112(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]