PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0493s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 373aa MW: 42793.2 Da PI: 8.9876

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0493s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.8	3.6e-113	2	369	4	373
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lL+ cA+avss+d + a++lL ++++ asp gd +qRla++f+++L+ar+a++++++y + ++++ + ++ l+a++++ ++ P+ ++ Kalax.0493s0001.1.p 2 LLVLCAQAVSSDDWRTANQLLRQIRQYASPLGDGTQRLAHCFANGLEARVAGTGNQIYTSRSSRRIT---AADILKAYQVYLHAIPFKQI 88 7999****************************************************887777777...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 + aNq+I +a+++++++Hi+Df+i +G+QWp ++q L+ R++gpp+lRiTg++ p++g +e++e tg+rL+k+++++gvpfe+ + Kalax.0493s0001.1.p 89 AMSFANQMIFQAASKAQTLHIVDFGILYGFQWPIFIQCLSRREGGPPKLRITGIDLPQPGfrPAERVEDTGRRLEKYCKRFGVPFEYYA- 177 *******************************************************9*************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +ak+++++++e+L++k++E laVn+ ++l++llde+v+++s+r++vL+l+++++P+++++ + ++n++ F++rf eal yysalfd + Kalax.0493s0001.1.p 178 IAKKWDTIRIEDLSIKRNEFLAVNCLFRLKNLLDETVDVTSPRNAVLSLIREMNPDIFTHGIANGSYNAPFFVTRFREALFYYSALFDVF 267 7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +a++pr+++er + E el g+++ nv+aceg er+er et+++W+ r ++aGF+++pl+++++++ + ++ + + + ++e+ +l+lg Kalax.0493s0001.1.p 268 DATIPRDNQERLMFEGELYGKDAINVIACEGVERVERPETYKQWQVRCNRAGFRQLPLDKEVMTKLRNKMEAWYHKDFVIDEDGSWLLLG 357 **********************************************************************888********* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r ++ +++W Kalax.0493s0001.1.p 358 WKGRIVFGATCW 369 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.603	1	350	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-110	2	369	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
TLLVLCAQAV SSDDWRTANQ LLRQIRQYAS PLGDGTQRLA HCFANGLEAR VAGTGNQIYT 60 SRSSRRITAA DILKAYQVYL HAIPFKQIAM SFANQMIFQA ASKAQTLHIV DFGILYGFQW 120 PIFIQCLSRR EGGPPKLRIT GIDLPQPGFR PAERVEDTGR RLEKYCKRFG VPFEYYAIAK 180 KWDTIRIEDL SIKRNEFLAV NCLFRLKNLL DETVDVTSPR NAVLSLIREM NPDIFTHGIA 240 NGSYNAPFFV TRFREALFYY SALFDVFDAT IPRDNQERLM FEGELYGKDA INVIACEGVE 300 RVERPETYKQ WQVRCNRAGF RQLPLDKEVM TKLRNKMEAW YHKDFVIDED GSWLLLGWKG 360 RIVFGATCWI PA*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

TLLVLCAQAV SSDDWRTANQ LLRQIRQYAS PLGDGTQRLA HCFANGLEAR VAGTGNQIYT  60
SRSSRRITAA DILKAYQVYL HAIPFKQIAM SFANQMIFQA ASKAQTLHIV DFGILYGFQW  120
PIFIQCLSRR EGGPPKLRIT GIDLPQPGFR PAERVEDTGR RLEKYCKRFG VPFEYYAIAK  180
KWDTIRIEDL SIKRNEFLAV NCLFRLKNLL DETVDVTSPR NAVLSLIREM NPDIFTHGIA  240
NGSYNAPFFV TRFREALFYY SALFDVFDAT IPRDNQERLM FEGELYGKDA INVIACEGVE  300
RVERPETYKQ WQVRCNRAGF RQLPLDKEVM TKLRNKMEAW YHKDFVIDED GSWLLLGWKG  360
RIVFGATCWI PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-56	6	371	26	380	Protein SCARECROW
5b3h_A	2e-56	6	371	25	379	Protein SCARECROW
5b3h_D	2e-56	6	371	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836065.1	0.0	PREDICTED: scarecrow-like protein 33
Refseq	XP_018836066.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	1e-176	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M5WJU6	0.0	M5WJU6_PRUPE; Uncharacterized protein
STRING	EMJ09503	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-179	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Kalax.0493s0001.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]