PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0491s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 517aa    MW: 57539.2 Da    PI: 6.0113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0491s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.21.7e-831605152374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          ve L+++A +++sg+l+la+a+L+rl+++ +sp g+p+qR+a+yf+eAL++ l+          +ps+ s  + +e++ a+k+fs +sPi
  Kalax.0491s0021.1.p 160 VEELIRAAGCFDSGELQLAHAMLSRLNQRlRSPLGKPLQRAAFYFKEALNSLLSV-------PTRPSRPSILEIVESIRAHKAFSSISPI 242
                          689*************************99*********************9998.......444455555669**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          + fs + +Nqa+le++e+++ vHi+Df+i+ G+Q+++L++++a+R+    ++   +RiT+++++e   ++e + ++++L +fA+ l+++f
  Kalax.0491s0021.1.p 243 PMFSDFSTNQAVLESIESSTFVHIVDFEIGLGGQYASLMREIADRSvsskQSRVAIRITAIVEEE--FEKESRLVRDNLCQFAHDLQIRF 330
                          **********************************************876444569********66..889999***************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyy 264
                          +++++  +++e+l+ +++++  +E+++V+l    +r             +++  ++ + P+ vv+v +e  + h++ sF + f+e leyy
  Kalax.0491s0021.1.p 331 RIDFVSLRSFEMLSEKSIDFTDDEKTIVHLTPVTFRRT---------GAKFVIDLRLVVPNAVVLVTSEewMTHETVSFRRSFVEGLEYY 411
                          ****9999***********************9888876.........3469999********999988878999**************** PP

                 GRAS 265 salfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                          s+l++sl+a ++    e+ +k+E+++l+r+iv  v + g +         +Wre+l+ aG++p+ ls  a+ qa++l+rk +++g++v  
  Kalax.0491s0021.1.p 412 SVLLESLDAAAAVGGgEWVKKIEAFVLRRRIVAEVETMGGK-------TTSWREMLGGAGMRPAGLSRLAEFQAECLVRKGEVRGFHVGT 494
                          *******87776666699*****************999998.......789*************************************** PP

                 GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                          ++g+lvl W++rpLv++S Wr
  Kalax.0491s0021.1.p 495 RHGELVLSWHGRPLVATSTWR 515
                          ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.159133495IPR005202Transcription factor GRAS
PfamPF035145.8E-81160515IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MRFPALTPHS AAHLSSSFIP NTAPSSTANF CFEPTSVLDL RRSPSPVHDH FPTTSISDVL  60
SQTEDLSLLP SINDHHQQAA VHNLDDWDSI MRELGLHDDF APSALKAITF PPHPSPSSES  120
GLTQFHDLAS SAIPNPDQPL FSPSDLEFAD WNTSVGFDFV EELIRAAGCF DSGELQLAHA  180
MLSRLNQRLR SPLGKPLQRA AFYFKEALNS LLSVPTRPSR PSILEIVESI RAHKAFSSIS  240
PIPMFSDFST NQAVLESIES STFVHIVDFE IGLGGQYASL MREIADRSVS SKQSRVAIRI  300
TAIVEEEFEK ESRLVRDNLC QFAHDLQIRF RIDFVSLRSF EMLSEKSIDF TDDEKTIVHL  360
TPVTFRRTGA KFVIDLRLVV PNAVVLVTSE EWMTHETVSF RRSFVEGLEY YSVLLESLDA  420
AAAVGGGEWV KKIEAFVLRR RIVAEVETMG GKTTSWREML GGAGMRPAGL SRLAEFQAEC  480
LVRKGEVRGF HVGTRHGELV LSWHGRPLVA TSTWRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-2016551424377Protein SCARECROW
5b3h_D5e-2016551424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076229.11e-165scarecrow-like protein 15
SwissprotO232101e-137SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A4D6NYX10.0A0A4D6NYX1_PAESU; Transcription factor GRAS 2
STRINGPGSC0003DMT4000330371e-160(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-139GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]