PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0486s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22594.1 Da    PI: 7.216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0486s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtf+kRr+gilKKA+ELSvLCdae+ v ifs +gkl+ey++
  Kalax.0486s0005.1.p  9 KRIENPVHRQVTFCKRRAGILKKAKELSVLCDAEIGVFIFSAHGKLFEYAT 59
                         79***********************************************86 PP
2K-box60.95.3e-219117615100
                K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          +   +e++ Lkkeie+Lq+  R + G + +++++ eL+  e++Le  + +iRs+K+e ++++ie+l++ke  l+ +n  L++k+ e
  Kalax.0486s0005.1.p  91 KDAIEEINMLKKEIESLQQVMRFMFGGGTGTMNVDELHVQEKHLEALIYHIRSTKMEAMFQEIETLKNKEGVLKAANSFLQQKMHE 176
                          455689****************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.702161IPR002100Transcription factor, MADS-box
CDDcd002651.07E-38274No hitNo description
SuperFamilySSF554551.44E-28382IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.61290180IPR002487Transcription factor, K-box
PfamPF014864.6E-1992174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MARGKVQMKR IENPVHRQVT FCKRRAGILK KAKELSVLCD AEIGVFIFSA HGKLFEYATK  60
GDMQGLIDRY TKSTTGETPL HQETEYSAFQ KDAIEEINML KKEIESLQQV MRFMFGGGTG  120
TMNVDELHVQ EKHLEALIYH IRSTKMEAMF QEIETLKNKE GVLKAANSFL QQKMHERVEE  180
MAADDFAALA ASVQFPIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18198189MEF2C
5f28_B2e-18198189MEF2C
5f28_C2e-18198189MEF2C
5f28_D2e-18198189MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093414.11e-86agamous-like MADS-box protein AGL12
SwissprotQ388419e-69AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A059BU685e-82A0A059BU68_EUCGR; Uncharacterized protein
TrEMBLA0A218W4Q45e-82A0A218W4Q4_PUNGR; Uncharacterized protein
STRINGXP_010062376.18e-83(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-59AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]