PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0485s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 44471.9 Da PI: 6.797 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.2e-07 | 3 | 44 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+ ++e++ +C++++ +lC +C + H+ H++ Kalax.0485s0035.1.p 3 RICDFCGEQRSMVYCRSDSACLCLSCDRNVHSAnalsnrHSR 44 79*****************************65677777765 PP | |||||||
2 | zf-B_box | 25.9 | 2e-08 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ +++++ C+d + lC++C ++H + H++++ Kalax.0485s0035.1.p 46 LLCERCMSQPAIVRCHDESASLCQNCDWSGHGNasvtstHKRQT 89 57*****************************6689999998876 PP | |||||||
3 | CCT | 63.5 | 6.4e-22 | 349 | 392 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k+RkF+KkirY+sRK++A+ R+RvKGrFvk+ Kalax.0485s0035.1.p 349 RDNAVRRYKEKKKHRKFDKKIRYASRKERADVRKRVKGRFVKAG 392 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.712 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.29E-8 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.314 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.46E-6 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.2 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.289 | 349 | 391 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-16 | 349 | 391 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGRICDFCGE QRSMVYCRSD SACLCLSCDR NVHSANALSN RHSRTLLCER CMSQPAIVRC 60 HDESASLCQN CDWSGHGNAS VTSTHKRQTI NCYSGCPSAA ELSRIWSFVL DMASTGDLDG 120 EKGAGSVAET CAGLTNLERK SSASLADASR IVELESKSAV LMPSSTMGAP KSTTLFKELP 180 TPPKQCCSIT EDIQLFDDDD NLFGDFSMAD ADLNLESYEE LFGYSQNFSE HLFENGGMAS 240 LFPERYIPEV GTSTQGPKAA KGPAAVRTNT MQPSCSNPMS VDSVVSCKTD PVAYPTRKDN 300 SGVTLSFSGM TNESSNGEYQ DCGVSPMVAI GEPPWCPPGL ENSLTSASRD NAVRRYKEKK 360 KHRKFDKKIR YASRKERADV RKRVKGRFVK AGEKYDYDPM CPTRSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 360 | 369 | KHRKFDKKIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010245014.1 | 1e-158 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-129 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A1U7Z2X7 | 1e-156 | A0A1U7Z2X7_NELNU; zinc finger protein CONSTANS-LIKE 9 | ||||
STRING | XP_010245014.1 | 1e-157 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-115 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0485s0035.1.p |
Publications ? help Back to Top | |||
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