PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0485s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 387aa    MW: 43752.1 Da    PI: 6.6404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0485s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.4e-1977124148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+WT+eEd  l  +++++G g+W++ ar+ g++Rt+k+c++rw++yl
  Kalax.0485s0015.1.p  77 RGPWTAEEDHTLMSYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 124
                          89********************************************97 PP
2Myb_DNA-binding50.93.6e-16130173146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0485s0015.1.p 130 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 173
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.51672128IPR017930Myb domain
SuperFamilySSF466892.28E-3174171IPR009057Homeodomain-like
SMARTSM007174.1E-1476126IPR001005SANT/Myb domain
PfamPF002493.8E-1777124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2478131IPR009057Homeodomain-like
CDDcd001672.12E-1179124No hitNo description
PROSITE profilePS5129418.707129179IPR017930Myb domain
SMARTSM007171.3E-14129177IPR001005SANT/Myb domain
PfamPF002497.1E-15130173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-22132178IPR009057Homeodomain-like
CDDcd001671.53E-7150173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDGYMNGRAV AAEGLLSHHL QQQQEQERER YYSNMSSSGG GGGALSSGNS NNQHKVQSSS  60
SGEEEDDEMA MMMDLRRGPW TAEEDHTLMS YIAKHGEGRW NSLARCAGLK RTGKSCRLRW  120
LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK  180
QLKCDVNSKQ FQDTMRYLWM PRLVERIQAA NGAASSAQIN PHNPLNHTLS NLTTPILHHH  240
PDMIMPPAAS APPRSHHHFT NSSYVGSENS STTAASSDSF GAQVSPVSDM SENYYMPASY  300
NLNNNVAYFN GGQIGYSDSL ISPAGYYHPQ APDFQSTEYN CNNHNSDVVS NNLDQWVMDG  360
GDLPDNMWNV EDIWHLQQQQ FNNNYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25741774106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316060.21e-126transcription factor MYB108
SwissprotQ10MB41e-86MYB2_ORYSJ; Transcription factor MYB2
TrEMBLB9HX621e-125B9HX62_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-126(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-83myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]