PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0484s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 322aa    MW: 37833.1 Da    PI: 4.8847
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0484s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.61.1e-29241192101
                          HHHHHHHHHCTGGGTTTSEESSSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkeliswseng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                          Fl+k+y++++d++++++isws+++    +sfv++d+++f++++Lp+yFkh+nf+ F+RQLn YgFkkv+ ++         weF++  F 
  Kalax.0484s0002.1.p  24 FLSKTYHLVDDPTTDQVISWSQDNnnssSSFVIWDPRTFSSTILPTYFKHTNFSNFIRQLNSYGFKKVNPDR---------WEFANAGFI 104
                          9********************555466789***************************************999.........********* PP

                          XXXXXXXXX.XXXXX CS
         HSF_DNA-bind  88 kgkkellek.ikrkk 101
                          +g+ +l+++ +kr++
  Kalax.0484s0002.1.p 105 RGHGHLMRTsMKRRA 119
                          ****99976477776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-3415111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-2819113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-4620118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-122447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-2624117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-127991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNPVEPSDRA QAAERVHESQ PPPFLSKTYH LVDDPTTDQV ISWSQDNNNS SSSFVIWDPR  60
TFSSTILPTY FKHTNFSNFI RQLNSYGFKK VNPDRWEFAN AGFIRGHGHL MRTSMKRRAR  120
QMQSSDVEPC PKFEEPGFDR EVHRLRRDRQ ILMTELVKLR QFQKTTRAHI RSMEQRLRKT  180
ELKQQQTTRF LAKAIRNPDF MQRFSGAKDT REEDEHSLSI EMRSTEEEPG ALCGFTEKEI  240
QDYVDISDYE VSDVVVWEKE NVLPVAEEGE HDQEQLVGEF LNDWIKEELR QVNVEEEYED  300
VQADHLEMIC FEEVPYSSQT M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-171911915121Heat shock factor protein 1
5hdg_A9e-18221198111Heat shock factor protein 1
5hdn_A9e-18221198111Heat shock factor protein 1
5hdn_B9e-18221198111Heat shock factor protein 1
5hdn_C9e-18221198111Heat shock factor protein 1
5hdn_D9e-18221198111Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RLRRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-66heat shock transcription factor A6B