PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0478s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 795aa MW: 88575.4 Da PI: 5.2658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.7 | 1.5e-19 | 36 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+++g gRt+ qc +rwqk+l Kalax.0478s0027.1.p 36 KGQWTAEEDETLRKAVEHYNGKSWKKIAECLG-GRTDVQCLHRWQKVL 82 799*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 88 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v + G W+ Ia+++ gR +kqc++rw+ +l Kalax.0478s0027.1.p 88 KGPWTKEEDKKIIELVGKNGATKWTNIAKHLT-GRIGKQCRERWYHHL 134 79*****************************9.************886 PP | |||||||
3 | Myb_DNA-binding | 47.1 | 5.6e-15 | 140 | 182 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ Kalax.0478s0027.1.p 140 KENWTQEEELTLIHAHRIYGNK-WAELTKFLP-GRSDNAIKNHWN 182 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.277 | 31 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-16 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 36 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.16E-16 | 37 | 92 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 38 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-14 | 39 | 82 | No hit | No description |
PROSITE profile | PS51294 | 28.119 | 83 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-29 | 86 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 87 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.54E-14 | 90 | 134 | No hit | No description |
Pfam | PF13921 | 1.7E-16 | 91 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 94 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 139 | 187 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.474 | 139 | 189 | IPR017930 | Myb domain |
CDD | cd00167 | 4.51E-11 | 142 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 143 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 795 aa Download sequence Send to blast |
MATGREVAIS EGGSSDGSSK KRPANRVSGP SRRSTKGQWT AEEDETLRKA VEHYNGKSWK 60 KIAECLGGRT DVQCLHRWQK VLDPALIKGP WTKEEDKKII ELVGKNGATK WTNIAKHLTG 120 RIGKQCRERW YHHLDPAIKK ENWTQEEELT LIHAHRIYGN KWAELTKFLP GRSDNAIKNH 180 WNSSVKKKEE SFMAAGLLSN FPGVPDFGQQ KLSVAFSSTQ QTSGENSHMR GGSEEDGVSE 240 CSQASTTLGC SQTSNDLTIK VESLNPIQEC HKNSLVNENH SLSCNVGLDE IGDPMLSQSS 300 HIQISQANET SDLPSNDPAS DYLDIPSFEH LFYDEPNQCQ ISFPETQGQD FYQSIHDDFS 360 YINQYDMNPT EIASENKVVY EESESGSHRI HAMAKSPDKS QCCTPMEVQP ALVHGEIINN 420 GGAAYYEPPH LTNLDIPFVS CDLVQSGDFL EEEYSPLGIR QLLLMNSFSP LRLWDDSPEA 480 GLKSATKTFT RTPSILKKRH RDLLSPLSEK RVDKKQDSEP EQSSFSGLAQ DTSQFNDDRK 540 ENFDPVLKTD EKDQTEGLSC ERVLEDINRD PKAHLDANDA THAVHQSSED LADKEIEKLI 600 LFSPRVQIQA EKELYAKGYL NLTSLSGNSN ESDRYTANEI ISFHTHSLTP RSRGIMVKKP 660 FIDADSDKSS RSDGTPFKIF FESPTLDSPL FAKLFLPGPR IDTDISIEDI GYLITPDSKS 720 YDAIGIMKKL SEQTSKTFIT GPNIVSNTVS LNAGNGISPT PDKHPEADRH SGSDILMERR 780 VLDFSDCGSP EKSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-64 | 36 | 188 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-64 | 36 | 188 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 2e-95 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0478s0027.1.p |