PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0478s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 506aa    MW: 55869.1 Da    PI: 6.6685
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0478s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-084254631854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp  +e+  LA k gLt +qV++WF N R +
  Kalax.0478s0010.1.p 425 MFQNflHPYPRDSEKHMLAVKSGLTRSQVSNWFINARVR 463
                          5787779******************************88 PP
2BELL52.21.6e-173103701172
                 BELL  11 kLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +L  ll++ d+ Y ++  +++ v+ssF+ ++g ++ ++++++Al+++S+ +++L+++i+ qi
  Kalax.0478s0010.1.p 310 QLQALLKMADEGYDKCSREVRNVVSSFHPITGSDP-EVHARFALQTTSFLYKNLRERISAQI 370
                          57788999999************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-8241368IPR006563POX domain
PfamPF075265.1E-14252367IPR006563POX domain
CDDcd000862.02E-10407468No hitNo description
SMARTSM003892.5E-4407471IPR001356Homeobox domain
SuperFamilySSF466893.46E-15409475IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-25410473IPR009057Homeodomain-like
PfamPF059205.5E-15424463IPR008422Homeobox KN domain
PROSITE profilePS5007110.916426467IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MHSSSYYSTH LIEDEMGSYV PLETPRADYN CASLSISGSY ADHLPSAFDL NNQQSQIMSG  60
YPVYSGLHGG EMISDVLASA HPPDVTLFGP RQDCENACEE QFGEGTLVPA TALASLLASR  120
ACLYQDDPTT CGSGNPRAFP YTSFDSQMHD DTASNVPVFY GNGFDGWAVT PDANLPPTYA  180
YNPAMLSNEL SLSLCQSSVQ DRCSGLACSS ITSRRDSGRG YEQSSSGKAS GHDRSLTYPA  240
RRTSQPSPAS SYTLKAVQQI LADLSRFSMG NVDQGSCSAR SPGNVASVSG ENSESDGSEP  300
SAATLSLQKQ LQALLKMADE GYDKCSREVR NVVSSFHPIT GSDPEVHARF ALQTTSFLYK  360
NLRERISAQI LNLKASMRID QESAFENSFL HKQWALQQQQ RKEHQLWRPQ RGLPERCVSV  420
LRAWMFQNFL HPYPRDSEKH MLAVKSGLTR SQVSNWFINA RVRIWKPMIE EMYAEISRRK  480
THWKSQAAEN SVRGHSSMGN QSLRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-15413471563Homeobox protein Meis2
4xrm_B3e-15413471563Homeobox protein Meis2
4xrs_A3e-15413470158Homeobox protein Meis1
4xrs_B3e-15413470158Homeobox protein Meis1
5bng_A4e-15413471159Homeobox protein Meis2
5bng_B4e-15413471159Homeobox protein Meis2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.13e-79homeobox gene 1