PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0476s0043.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 294aa MW: 31865.7 Da PI: 9.3588 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.9 | 1.2e-28 | 44 | 93 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + YkeC+kNhAa++Ggha+DGCgE+mp + +l+CaACgCHRnFHR e+ Kalax.0476s0043.1.p 44 TPSYKECQKNHAAAIGGHALDGCGEYMPP-----PSPSLQCAACGCHRNFHRPET 93 568*************************9.....4579**************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.4E-24 | 46 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-15 | 46 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.923 | 47 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-26 | 47 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.32E-16 | 179 | 245 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-28 | 180 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-26 | 187 | 243 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDSGMVAVKM SSDQQAQAQR LCFKALSFSG KRERSRNEHQ SHETPSYKEC QKNHAAAIGG 60 HALDGCGEYM PPPSPSLQCA ACGCHRNFHR PETPSAAAGV ESRMKTVAAA PIFSHRPRRF 120 SSTSPSSSSS PSRSEAPISS IYPSAPQILM TLSSGVEMTS AHTTTTTTAP DTIKLCFGED 180 GKMGKPRKRF RTKFSAEQKE KMRMFAEGFG WKMQRSDEDV VKRFCDEIGV CRSVLKVWMH 240 NNKSRNSTGI NSNNTFDYNG GGLNGDRVDS EEMHLAGING GKQSTHGGSS SSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-20 | 188 | 244 | 18 | 74 | ZF-HD homeobox family protein |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257380.1 | 3e-56 | PREDICTED: zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1U7ZYG6 | 7e-55 | A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9 | ||||
STRING | XP_010257380.1 | 1e-55 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 3e-45 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0476s0043.1.p |