PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0476s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 391aa MW: 43423.7 Da PI: 6.3744 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.5 | 2.3e-20 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq+t++kR+ngilKKA+EL +LCd++ +++fs+tgk Kalax.0476s0037.1.p 9 KRLENSNGRQTTYAKRKNGILKKANELAILCDIDLILLMFSPTGK 53 689****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.717 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.6E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.22E-24 | 2 | 81 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-25 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MGRVKLKIKR LENSNGRQTT YAKRKNGILK KANELAILCD IDLILLMFSP TGKPSLCCGK 60 RGVEEVISKF AQMTPQERAK RQLEGLEALK KTFKKLDHDV NIQDFLGAST QTVEGLTEQT 120 IQLRTELEET QQRLSYWSDP SRIESIDHLG QLEESLGKSL DAIRSRKENL EKQHLILQET 180 TAQIQNELQM PYRVNLEQHY QPLPWIAPND APHIPLAEDP NLIPQREIEC AANSSFAAYS 240 SYLDLCKRAQ SGAFRDDSGF LSELGRSSPL GQLVNGQYSL PSYSSNLMGS NTKYPGDTNL 300 QNSFHLEPQP TFGTHPVFDT NHTSWPPTSG PFADAIHSSW ASPCGPLVDT SHGVWGSPYG 360 PCAATTTSGN WASPGSYPVA LFDEHYQQPH * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018845248.1 | 1e-123 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X4 | ||||
Swissprot | Q1PFA4 | 7e-92 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A2I4GMY3 | 1e-121 | A0A2I4GMY3_JUGRE; agamous-like MADS-box protein AGL30 isoform X4 | ||||
STRING | XP_004298422.1 | 1e-115 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-76 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0476s0037.1.p |
Publications ? help Back to Top | |||
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