PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0476s0028.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Whirly | ||||||||
Protein Properties | Length: 279aa MW: 30885.1 Da PI: 10.0671 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 208.3 | 8.3e-65 | 103 | 241 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 s+yk+kaal+v+++ p+f l+sg++k+ ++G++ll++a+a + r+ydW++kq+f+ls+ e+++l++l++kesceffhdp++++s+eGkv Kalax.0476s0028.1.p 103 SIYKGKAALTVEPRGPEFAPLESGSFKVAKDGFVLLQFAPASGLRQYDWSRKQVFSLSVVEIGTLMSLGPKESCEFFHDPFKGKSDEGKV 192 7***************************************************************************************** PP Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 rk+lkvePl+dG+G+f+nlsv+n+l++ +es+++P++kaefa+l+s+++ Kalax.0476s0028.1.p 193 RKVLKVEPLADGTGHFFNLSVQNKLLNMDESIYIPITKAEFAILNSVFN 241 *********************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.1E-76 | 92 | 260 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.67E-73 | 96 | 277 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 8.1E-60 | 104 | 239 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MTSLQILPHS LQTRNPRLLP NSRFPLEGSV HRIARSSIIS RSPSSEIATK KSLKNQTSFI 60 LCRRSEYFEP QRFDSSRPSY DRPGGSGGGE GGDFQTRVFV GHSIYKGKAA LTVEPRGPEF 120 APLESGSFKV AKDGFVLLQF APASGLRQYD WSRKQVFSLS VVEIGTLMSL GPKESCEFFH 180 DPFKGKSDEG KVRKVLKVEP LADGTGHFFN LSVQNKLLNM DESIYIPITK AEFAILNSVF 240 NFILPHLIGW HAYATSIKPG GASRVNNTGS PVDYEWNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 2e-98 | 96 | 261 | 7 | 172 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 2e-98 | 96 | 261 | 7 | 172 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 2e-98 | 96 | 261 | 7 | 172 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 2e-98 | 96 | 261 | 7 | 172 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021664941.1 | 1e-116 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 1e-109 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | D7TND7 | 1e-112 | D7TND7_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0026g01720.t01 | 1e-113 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-110 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0476s0028.1.p |